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Variables
test.T100_basic Namespace Reference

Variables

tuple pose = Pose()
 
tuple pose3 = pose_from_sequence("DSEEKFLRRIGRFGYGYGPYE",'centroid')
 
tuple pose4 = pose_from_sequence("ARNDCEQGHILKMFPSTWYV", 'fa_standard')
 
tuple res5 = pose.residue(5)
 
tuple at5N = res5.atom('N')
 
tuple at5CA = res5.atom("CA")
 
tuple at5C = res5.atom("C")
 
tuple atomN = AtomID(1,5)
 
tuple atomCA = AtomID(2,5)
 
tuple atomC = AtomID(3,5)
 
tuple chm = rosetta.core.chemical.ChemicalManager.get_instance()
 
tuple rts = chm.residue_type_set('fa_standard')
 
tuple ala = rosetta.core.conformation.ResidueFactory.create_residue( rts.name_map('ALA') )
 

Variable Documentation

tuple test.T100_basic.ala = rosetta.core.conformation.ResidueFactory.create_residue( rts.name_map('ALA') )

Referenced by run_pep_prep().

tuple test.T100_basic.at5C = res5.atom("C")
tuple test.T100_basic.at5CA = res5.atom("CA")
tuple test.T100_basic.at5N = res5.atom('N')
tuple test.T100_basic.atomC = AtomID(3,5)
tuple test.T100_basic.atomCA = AtomID(2,5)
tuple test.T100_basic.atomN = AtomID(1,5)
tuple test.T100_basic.chm = rosetta.core.chemical.ChemicalManager.get_instance()
tuple test.T100_basic.pose = Pose()
tuple test.T100_basic.pose3 = pose_from_sequence("DSEEKFLRRIGRFGYGYGPYE",'centroid')
tuple test.T100_basic.pose4 = pose_from_sequence("ARNDCEQGHILKMFPSTWYV", 'fa_standard')
tuple test.T100_basic.res5 = pose.residue(5)
tuple test.T100_basic.rts = chm.residue_type_set('fa_standard')