Rosetta  2020.37
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Functions
ddg Namespace Reference

Functions

BooleanOptionKey const ddg ("ddg")
 
BooleanOptionKey const opt_input_structure ("ddg:opt_input_structure")
 
BooleanOptionKey const pack_until_converge ("ddg:pack_until_converge")
 
BooleanOptionKey const no_constraints ("ddg:no_constraints")
 
BooleanOptionKey const use_rotamer_constraints_to_native ("ddg:use_rotamer_constraints_to_native")
 
BooleanOptionKey const suppress_checkpointing ("ddg:suppress_checkpointing")
 
BooleanOptionKey const wt_only ("ddg:wt_only")
 
BooleanOptionKey const mut_only ("ddg:mut_only")
 
BooleanOptionKey const optimize_wt ("ddg:optimize_wt")
 
BooleanOptionKey const output_silent ("ddg:output_silent")
 
StringOptionKey const minimization_scorefunction ("ddg:minimization_scorefunction")
 
StringOptionKey const minimization_patch ("ddg:minimization_patch")
 
BooleanOptionKey const min_cst ("ddg:min_cst")
 
IntegerOptionKey const lowest_x_decoys ("ddg:lowest_x_decoys")
 
BooleanOptionKey const local_opt_only ("ddg:local_opt_only")
 
BooleanOptionKey const print_per_res_diff ("ddg:print_per_res_diff")
 
BooleanOptionKey const mean ("ddg:mean")
 
BooleanOptionKey const min ("ddg:min")
 
BooleanOptionKey const no_bb_movement ("ddg:no_bb_movement")
 
BooleanOptionKey const initial_repack ("ddg:initial_repack")
 
IntegerOptionKey const interface_ddg ("ddg:interface_ddg")
 
RealOptionKey const ens_variation ("ddg:ens_variation")
 
BooleanOptionKey const sc_min_only ("ddg:sc_min_only")
 
BooleanOptionKey const rna_all_prot_sc_min_only ("ddg:rna_all_prot_sc_min_only")
 
StringOptionKey const min_cst_weights ("ddg:min_cst_weights")
 
RealOptionKey const opt_radius ("ddg:opt_radius")
 
StringOptionKey const output_dir ("ddg:output_dir")
 
StringOptionKey const last_accepted_pose_dir ("ddg:last_accepted_pose_dir")
 
BooleanOptionKey const min_with_cst ("ddg:min_with_cst")
 
RealOptionKey const temperature ("ddg:temperature")
 
BooleanOptionKey const ramp_repulsive ("ddg:ramp_repulsive")
 
StringOptionKey const mut_file ("ddg:mut_file")
 
StringOptionKey const out_pdb_prefix ("ddg:out_pdb_prefix")
 
RealOptionKey const constraint_weight ("ddg:constraint_weight")
 
RealOptionKey const harmonic_ca_tether ("ddg:harmonic_ca_tether")
 
IntegerOptionKey const iterations ("ddg:iterations")
 
BooleanOptionKey const force_iterations ("ddg:force_iterations")
 
StringOptionKey const out ("ddg:out")
 
BooleanOptionKey const debug_output ("ddg:debug_output")
 
BooleanOptionKey const dump_pdbs ("ddg:dump_pdbs")
 
StringOptionKey const weight_file ("ddg:weight_file")
 
RealOptionKey const cst_dist_cutoff ("ddg:cst_dist_cutoff")
 
BooleanOptionKey const cartesian ("ddg:cartesian")
 
IntegerOptionKey const extract_element_nbrs ("ddg:extract_element_nbrs")
 
IntegerOptionKey const frag_nbrs ("ddg:frag_nbrs")
 
IntegerOptionKey const bbnbrs ("ddg:bbnbrs")
 
IntegerOptionKey const nfrags ("ddg:nfrags")
 
IntegerOptionKey const ntrials ("ddg:ntrials")
 
BooleanOptionKey const optimize_proline ("ddg:optimize_proline")
 
BooleanOptionKey const flex_bb ("ddg:flex_bb")
 
BooleanOptionKey const fd_mode ("ddg:fd_mode")
 
BooleanOptionKey const legacy ("ddg:legacy")
 
BooleanOptionKey const json ("ddg:json")
 
IntegerOptionKey const n_converged ("ddg:n_converged")
 
RealOptionKey const score_cutoff ("ddg:score_cutoff")
 

Function Documentation

IntegerOptionKey const ddg::bbnbrs ( "ddg:bbnbrs"  )
BooleanOptionKey const ddg::cartesian ( "ddg:cartesian"  )
RealOptionKey const ddg::constraint_weight ( "ddg:constraint_weight"  )
RealOptionKey const ddg::cst_dist_cutoff ( "ddg:cst_dist_cutoff"  )
BooleanOptionKey const ddg::ddg ( "ddg"  )
BooleanOptionKey const ddg::debug_output ( "ddg:debug_output"  )

Referenced by main().

BooleanOptionKey const ddg::dump_pdbs ( "ddg:dump_pdbs"  )

Referenced by main().

RealOptionKey const ddg::ens_variation ( "ddg:ens_variation"  )
IntegerOptionKey const ddg::extract_element_nbrs ( "ddg:extract_element_nbrs"  )
BooleanOptionKey const ddg::fd_mode ( "ddg:fd_mode"  )
BooleanOptionKey const ddg::flex_bb ( "ddg:flex_bb"  )
BooleanOptionKey const ddg::force_iterations ( "ddg:force_iterations"  )
IntegerOptionKey const ddg::frag_nbrs ( "ddg:frag_nbrs"  )
RealOptionKey const ddg::harmonic_ca_tether ( "ddg:harmonic_ca_tether"  )
BooleanOptionKey const ddg::initial_repack ( "ddg:initial_repack"  )
IntegerOptionKey const ddg::interface_ddg ( "ddg:interface_ddg"  )

Referenced by main().

IntegerOptionKey const ddg::iterations ( "ddg:iterations"  )

Referenced by main().

BooleanOptionKey const ddg::json ( "ddg:json"  )
StringOptionKey const ddg::last_accepted_pose_dir ( "ddg:last_accepted_pose_dir"  )
BooleanOptionKey const ddg::legacy ( "ddg:legacy"  )
BooleanOptionKey const ddg::local_opt_only ( "ddg:local_opt_only"  )
IntegerOptionKey const ddg::lowest_x_decoys ( "ddg:lowest_x_decoys"  )
BooleanOptionKey const ddg::mean ( "ddg:mean"  )
BooleanOptionKey const ddg::min ( "ddg:min"  )
BooleanOptionKey const ddg::min_cst ( "ddg:min_cst"  )
StringOptionKey const ddg::min_cst_weights ( "ddg:min_cst_weights"  )
BooleanOptionKey const ddg::min_with_cst ( "ddg:min_with_cst"  )
StringOptionKey const ddg::minimization_patch ( "ddg:minimization_patch"  )
StringOptionKey const ddg::minimization_scorefunction ( "ddg:minimization_scorefunction"  )
StringOptionKey const ddg::mut_file ( "ddg:mut_file"  )
BooleanOptionKey const ddg::mut_only ( "ddg:mut_only"  )
IntegerOptionKey const ddg::n_converged ( "ddg:n_converged"  )
IntegerOptionKey const ddg::nfrags ( "ddg:nfrags"  )
BooleanOptionKey const ddg::no_bb_movement ( "ddg:no_bb_movement"  )
BooleanOptionKey const ddg::no_constraints ( "ddg:no_constraints"  )
IntegerOptionKey const ddg::ntrials ( "ddg:ntrials"  )
BooleanOptionKey const ddg::opt_input_structure ( "ddg:opt_input_structure"  )
RealOptionKey const ddg::opt_radius ( "ddg:opt_radius"  )

Referenced by main().

BooleanOptionKey const ddg::optimize_proline ( "ddg:optimize_proline"  )
BooleanOptionKey const ddg::optimize_wt ( "ddg:optimize_wt"  )
StringOptionKey const ddg::out ( "ddg:out"  )

Referenced by main().

StringOptionKey const ddg::out_pdb_prefix ( "ddg:out_pdb_prefix"  )
StringOptionKey const ddg::output_dir ( "ddg:output_dir"  )
BooleanOptionKey const ddg::output_silent ( "ddg:output_silent"  )
BooleanOptionKey const ddg::pack_until_converge ( "ddg:pack_until_converge"  )
BooleanOptionKey const ddg::print_per_res_diff ( "ddg:print_per_res_diff"  )
BooleanOptionKey const ddg::ramp_repulsive ( "ddg:ramp_repulsive"  )
BooleanOptionKey const ddg::rna_all_prot_sc_min_only ( "ddg:rna_all_prot_sc_min_only"  )
BooleanOptionKey const ddg::sc_min_only ( "ddg:sc_min_only"  )
RealOptionKey const ddg::score_cutoff ( "ddg:score_cutoff"  )
BooleanOptionKey const ddg::suppress_checkpointing ( "ddg:suppress_checkpointing"  )
RealOptionKey const ddg::temperature ( "ddg:temperature"  )
BooleanOptionKey const ddg::use_rotamer_constraints_to_native ( "ddg:use_rotamer_constraints_to_native"  )
StringOptionKey const ddg::weight_file ( "ddg:weight_file"  )

Referenced by main().

BooleanOptionKey const ddg::wt_only ( "ddg:wt_only"  )