Rosetta  2020.37
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Namespaces | Functions
remodel Namespace Reference

Namespaces

 design
 
 domainFusion
 
 RemodelLoopMover
 
 staged_sampling
 

Functions

BooleanOptionKey const remodel ("remodel")
 
FileOptionKey const blueprint ("remodel:blueprint")
 
FileOptionKey const cstfile ("remodel:cstfile")
 
BooleanOptionKey const cst_fa_only ("remodel:cst_fa_only")
 
IntegerOptionKey const cstfilter ("remodel:cstfilter")
 
StringOptionKey const cen_sfxn ("remodel:cen_sfxn")
 
BooleanOptionKey const check_scored_centroid ("remodel:check_scored_centroid")
 
IntegerOptionKey const num_trajectory ("remodel:num_trajectory")
 
IntegerOptionKey const save_top ("remodel:save_top")
 
BooleanOptionKey const swap_refine_confirm_protocols ("remodel:swap_refine_confirm_protocols")
 
BooleanOptionKey const bypass_fragments ("remodel:bypass_fragments")
 
BooleanOptionKey const use_same_length_fragments ("remodel:use_same_length_fragments")
 
BooleanOptionKey const no_jumps ("remodel:no_jumps")
 
IntegerOptionKey const reroot_tree ("remodel:reroot_tree")
 
BooleanOptionKey const use_blueprint_sequence ("remodel:use_blueprint_sequence ")
 
BooleanOptionKey const quick_and_dirty ("remodel:quick_and_dirty ")
 
BooleanOptionKey const checkpoint ("remodel:checkpoint ")
 
BooleanOptionKey const use_pose_relax ("remodel:use_pose_relax ")
 
BooleanOptionKey const use_cart_relax ("remodel:use_cart_relax ")
 
BooleanOptionKey const free_relax ("remodel:free_relax ")
 
StringOptionKey const generic_aa ("remodel:generic_aa")
 
RealOptionKey const cluster_radius ("remodel:cluster_radius")
 
BooleanOptionKey const use_clusters ("remodel:use_clusters")
 
BooleanOptionKey const run_confirmation ("remodel:run_confirmation")
 
BooleanOptionKey const cluster_on_entire_pose ("remodel:cluster_on_entire_pose")
 
IntegerOptionKey const dr_cycles ("remodel:dr_cycles")
 
IntegerOptionKey const two_chain_tree ("remodel:two_chain_tree")
 
IntegerOptionKey const repeat_structure ("remodel:repeat_structure")
 
IntegerOptionKey const lh_ex_limit ("remodel:lh_ex_limit")
 
StringVectorOptionKey const lh_filter_string ("remodel:lh_filter_string")
 
IntegerOptionKey const lh_cbreak_selection ("remodel:lh_cbreak_selection")
 
BooleanOptionKey const lh_closure_filter ("remodel:lh_closure_filter")
 
BooleanOptionKey const cen_minimize ("remodel:cen_minimize")
 
IntegerOptionKey const core_cutoff ("remodel:core_cutoff")
 
IntegerOptionKey const boundary_cutoff ("remodel:boundary_cutoff")
 
StringOptionKey const coreAA ("remodel:coreAA")
 
StringOptionKey const boundaryAA ("remodel:boundaryAA")
 
StringOptionKey const surfaceAA ("remodel:surfaceAA")
 
BooleanOptionKey const design_around_ligand ("remodel:design_around_ligand")
 
BooleanOptionKey const move_ligand ("remodel:move_ligand")
 
BooleanOptionKey const resclass_by_sasa ("remodel:resclass_by_sasa")
 
RealOptionKey const helical_rise ("remodel:helical_rise")
 
RealOptionKey const helical_radius ("remodel:helical_radius")
 
RealOptionKey const helical_omega ("remodel:helical_omega")
 
RealVectorOptionKey const filter_rise ("remodel:filter_rise")
 
RealVectorOptionKey const filter_radius ("remodel:filter_radius")
 
RealVectorOptionKey const filter_omega ("remodel:filter_omega")
 
RealOptionKey const COM_sd ("remodel:COM_sd")
 
RealOptionKey const COM_tolerance ("remodel:COM_tolerance")
 
RealOptionKey const vdw ("remodel:vdw")
 
RealOptionKey const rama ("remodel:rama")
 
RealOptionKey const cbeta ("remodel:cbeta")
 
RealOptionKey const cenpack ("remodel:cenpack")
 
RealOptionKey const rg_local ("remodel:rg_local")
 
RealOptionKey const hb_lrbb ("remodel:hb_lrbb")
 
RealOptionKey const hb_srbb ("remodel:hb_srbb")
 
RealOptionKey const rg ("remodel:rg")
 
RealOptionKey const rsigma ("remodel:rsigma")
 
RealOptionKey const ss_pair ("remodel:ss_pair")
 
BooleanOptionKey const build_disulf ("remodel:build_disulf")
 
RealOptionKey const match_rt_limit ("remodel:match_rt_limit")
 
IntegerVectorOptionKey const disulf_landing_range ("remodel:disulf_landing_range")
 
BooleanOptionKey const rank_by_bsasa ("remodel:rank_by_bsasa")
 

Function Documentation

FileOptionKey const remodel::blueprint ( "remodel:blueprint"  )
IntegerOptionKey const remodel::boundary_cutoff ( "remodel:boundary_cutoff"  )
StringOptionKey const remodel::boundaryAA ( "remodel:boundaryAA"  )
BooleanOptionKey const remodel::build_disulf ( "remodel:build_disulf"  )
BooleanOptionKey const remodel::bypass_fragments ( "remodel:bypass_fragments"  )
RealOptionKey const remodel::cbeta ( "remodel:cbeta"  )
BooleanOptionKey const remodel::cen_minimize ( "remodel:cen_minimize"  )
StringOptionKey const remodel::cen_sfxn ( "remodel:cen_sfxn"  )
RealOptionKey const remodel::cenpack ( "remodel:cenpack"  )
BooleanOptionKey const remodel::check_scored_centroid ( "remodel:check_scored_centroid"  )
BooleanOptionKey const remodel::checkpoint ( "remodel:checkpoint "  )
BooleanOptionKey const remodel::cluster_on_entire_pose ( "remodel:cluster_on_entire_pose"  )
RealOptionKey const remodel::cluster_radius ( "remodel:cluster_radius"  )
RealOptionKey const remodel::COM_sd ( "remodel:COM_sd"  )
RealOptionKey const remodel::COM_tolerance ( "remodel:COM_tolerance"  )
IntegerOptionKey const remodel::core_cutoff ( "remodel:core_cutoff"  )
StringOptionKey const remodel::coreAA ( "remodel:coreAA"  )
BooleanOptionKey const remodel::cst_fa_only ( "remodel:cst_fa_only"  )
FileOptionKey const remodel::cstfile ( "remodel:cstfile"  )
IntegerOptionKey const remodel::cstfilter ( "remodel:cstfilter"  )
BooleanOptionKey const remodel::design_around_ligand ( "remodel:design_around_ligand"  )
IntegerVectorOptionKey const remodel::disulf_landing_range ( "remodel:disulf_landing_range"  )
IntegerOptionKey const remodel::dr_cycles ( "remodel:dr_cycles"  )
RealVectorOptionKey const remodel::filter_omega ( "remodel:filter_omega"  )
RealVectorOptionKey const remodel::filter_radius ( "remodel:filter_radius"  )
RealVectorOptionKey const remodel::filter_rise ( "remodel:filter_rise"  )
BooleanOptionKey const remodel::free_relax ( "remodel:free_relax "  )
StringOptionKey const remodel::generic_aa ( "remodel:generic_aa"  )
RealOptionKey const remodel::hb_lrbb ( "remodel:hb_lrbb"  )
RealOptionKey const remodel::hb_srbb ( "remodel:hb_srbb"  )
RealOptionKey const remodel::helical_omega ( "remodel:helical_omega"  )
RealOptionKey const remodel::helical_radius ( "remodel:helical_radius"  )
RealOptionKey const remodel::helical_rise ( "remodel:helical_rise"  )
IntegerOptionKey const remodel::lh_cbreak_selection ( "remodel:lh_cbreak_selection"  )
BooleanOptionKey const remodel::lh_closure_filter ( "remodel:lh_closure_filter"  )
IntegerOptionKey const remodel::lh_ex_limit ( "remodel:lh_ex_limit"  )
StringVectorOptionKey const remodel::lh_filter_string ( "remodel:lh_filter_string"  )
RealOptionKey const remodel::match_rt_limit ( "remodel:match_rt_limit"  )
BooleanOptionKey const remodel::move_ligand ( "remodel:move_ligand"  )
BooleanOptionKey const remodel::no_jumps ( "remodel:no_jumps"  )
IntegerOptionKey const remodel::num_trajectory ( "remodel:num_trajectory"  )
BooleanOptionKey const remodel::quick_and_dirty ( "remodel:quick_and_dirty "  )
RealOptionKey const remodel::rama ( "remodel:rama"  )
BooleanOptionKey const remodel::rank_by_bsasa ( "remodel:rank_by_bsasa"  )
BooleanOptionKey const remodel::remodel ( "remodel"  )
IntegerOptionKey const remodel::repeat_structure ( "remodel:repeat_structure"  )
IntegerOptionKey const remodel::reroot_tree ( "remodel:reroot_tree"  )
BooleanOptionKey const remodel::resclass_by_sasa ( "remodel:resclass_by_sasa"  )
RealOptionKey const remodel::rg ( "remodel:rg"  )
RealOptionKey const remodel::rg_local ( "remodel:rg_local"  )
RealOptionKey const remodel::rsigma ( "remodel:rsigma"  )
BooleanOptionKey const remodel::run_confirmation ( "remodel:run_confirmation"  )
IntegerOptionKey const remodel::save_top ( "remodel:save_top"  )
RealOptionKey const remodel::ss_pair ( "remodel:ss_pair"  )
StringOptionKey const remodel::surfaceAA ( "remodel:surfaceAA"  )
BooleanOptionKey const remodel::swap_refine_confirm_protocols ( "remodel:swap_refine_confirm_protocols"  )
IntegerOptionKey const remodel::two_chain_tree ( "remodel:two_chain_tree"  )
BooleanOptionKey const remodel::use_blueprint_sequence ( "remodel:use_blueprint_sequence "  )
BooleanOptionKey const remodel::use_cart_relax ( "remodel:use_cart_relax "  )
BooleanOptionKey const remodel::use_clusters ( "remodel:use_clusters"  )
BooleanOptionKey const remodel::use_pose_relax ( "remodel:use_pose_relax "  )
BooleanOptionKey const remodel::use_same_length_fragments ( "remodel:use_same_length_fragments"  )
RealOptionKey const remodel::vdw ( "remodel:vdw"  )