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Namespaces | Variables
basic::options::OptionKeys::relax Namespace Reference

Namespaces

 centroid
 
 range
 

Variables

BooleanOptionKey const relax
 
BooleanOptionKey const fast
 
BooleanOptionKey const thorough
 
BooleanOptionKey const centroid_mode
 
IntegerOptionKey const default_repeats
 
BooleanOptionKey const dualspace
 
BooleanOptionKey const cyclic_peptide
 
BooleanOptionKey const ramady
 
RealOptionKey const ramady_rms_limit
 
RealOptionKey const ramady_cutoff
 
IntegerOptionKey const ramady_max_rebuild
 
BooleanOptionKey const ramady_force
 
FileOptionKey const script
 
IntegerOptionKey const script_max_accept
 
BooleanOptionKey const superimpose_to_native
 
FileOptionKey const superimpose_to_file
 
BooleanOptionKey const constrain_relax_to_native_coords
 
BooleanOptionKey const constrain_relax_to_start_coords
 
BooleanOptionKey const coord_constrain_sidechains
 
RealOptionKey const sc_cst_maxdist
 
BooleanOptionKey const limit_aroma_chi2
 
BooleanOptionKey const respect_resfile
 
BooleanOptionKey const use_explicit_water
 
BooleanOptionKey const movemap_disables_packing_of_fixed_chi_positions
 
BooleanOptionKey const bb_move
 
BooleanOptionKey const chi_move
 
BooleanOptionKey const jump_move
 
BooleanOptionKey const dna_move
 
BooleanOptionKey const fix_omega
 
BooleanOptionKey const minimize_bond_lengths
 
BooleanOptionKey const minimize_bond_angles
 
IntegerOptionKey const minimize_bondlength_subset
 
IntegerOptionKey const minimize_bondangle_subset
 
StringOptionKey const min_type
 
BooleanOptionKey const cartesian
 
RealOptionKey const chainbreak_weight
 
RealOptionKey const linear_chainbreak_weight
 
RealOptionKey const overlap_chainbreak_weight
 
BooleanOptionKey const classic
 
FileOptionKey const sequence_file
 
BooleanOptionKey const quick
 
BooleanOptionKey const sequence
 
IntegerOptionKey const minirelax_repeats
 
RealOptionKey const minirelax_sdev
 
BooleanOptionKey const wobblemoves
 
FileOptionKey const constrain_relax_segments
 
RealOptionKey const coord_cst_width
 
RealOptionKey const coord_cst_stdev
 
BooleanOptionKey const ramp_constraints
 
RealOptionKey const energycut
 
BooleanOptionKey const mini
 
IntegerOptionKey const stage1_ramp_cycles
 
IntegerOptionKey const stage1_ramp_inner_cycles
 
IntegerOptionKey const stage2_repack_period
 
IntegerOptionKey const stage2_cycles
 
RealOptionKey const min_tolerance
 
IntegerOptionKey const stage3_cycles
 
RealOptionKey const cycle_ratio
 
RealOptionKey const filter_stage2_beginning
 
RealOptionKey const filter_stage2_quarter
 
RealOptionKey const filter_stage2_half
 
RealOptionKey const filter_stage2_end
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::relax::bb_move
BooleanOptionKey const basic::options::OptionKeys::relax::cartesian

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::centroid_mode
RealOptionKey const basic::options::OptionKeys::relax::chainbreak_weight

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::chi_move
BooleanOptionKey const basic::options::OptionKeys::relax::classic

Referenced by add_rosetta_options_12().

FileOptionKey const basic::options::OptionKeys::relax::constrain_relax_segments

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::constrain_relax_to_native_coords

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::constrain_relax_to_start_coords

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::coord_constrain_sidechains

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::coord_cst_stdev

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::coord_cst_width

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::cycle_ratio

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::cyclic_peptide

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::default_repeats

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::dna_move

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::dualspace

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::energycut

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::fast

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_beginning

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_end

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_half

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_quarter

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::fix_omega

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::jump_move
BooleanOptionKey const basic::options::OptionKeys::relax::limit_aroma_chi2

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::linear_chainbreak_weight

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::min_tolerance
StringOptionKey const basic::options::OptionKeys::relax::min_type

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::mini

Referenced by add_rosetta_options_12(), and main().

BooleanOptionKey const basic::options::OptionKeys::relax::minimize_bond_angles

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::minimize_bond_lengths

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::minimize_bondangle_subset

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::minimize_bondlength_subset

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::minirelax_repeats

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::minirelax_sdev

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::movemap_disables_packing_of_fixed_chi_positions

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::overlap_chainbreak_weight

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::quick

Referenced by add_rosetta_options_12(), and main().

BooleanOptionKey const basic::options::OptionKeys::relax::ramady

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::ramady_cutoff

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::ramady_force

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::ramady_max_rebuild

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::ramady_rms_limit

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::ramp_constraints

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::relax

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::respect_resfile

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::sc_cst_maxdist

Referenced by add_rosetta_options_12().

FileOptionKey const basic::options::OptionKeys::relax::script

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::script_max_accept

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::sequence
FileOptionKey const basic::options::OptionKeys::relax::sequence_file

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage1_ramp_cycles

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage1_ramp_inner_cycles

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage2_cycles

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage2_repack_period

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage3_cycles

Referenced by add_rosetta_options_12().

FileOptionKey const basic::options::OptionKeys::relax::superimpose_to_file

Referenced by add_rosetta_options_12(), and main().

BooleanOptionKey const basic::options::OptionKeys::relax::superimpose_to_native

Referenced by add_rosetta_options_12(), and main().

BooleanOptionKey const basic::options::OptionKeys::relax::thorough

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::use_explicit_water

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::wobblemoves

Referenced by add_rosetta_options_12().