Rosetta  2020.46
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Classes | Namespaces | Typedefs | Functions | Variables
metal_site_finder.cc File Reference
#include <protocols/moves/Mover.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <core/id/AtomID.hh>
#include <core/chemical/AtomType.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/conformation/AtomGraph.hh>
#include <core/conformation/AtomGraphData.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/find_neighbors.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <utility/vector1.functions.hh>
#include <utility/excn/Exceptions.hh>
#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <string>

Classes

class  MetalSiteFinderMover
 

Namespaces

 local
 

Typedefs

typedef
utility::pointer::shared_ptr
< MetalSiteFinderMover
MetalSiteFinderMoverOP
 
typedef
utility::pointer::shared_ptr
< MetalSiteFinderMover const > 
MetalSiteFinderMoverCOP
 

Functions

int main (int argc, char *argv[])
 

Variables

static basic::Tracer TR ("apps.pilot.guffysl.metal_site_finder")
 
basic::options::StringOptionKey
const 
local::metal_type ("metal_type")
 
basic::options::RealOptionKey const local::metal_ligand_distance_cutoff ("metal_ligand_distance_cutoff")
 
basic::options::IntegerOptionKey
const 
local::min_total_coord_atoms ("min_total_coord_atoms")
 
basic::options::IntegerOptionKey
const 
local::min_local_coord_atoms ("min_local_coord_atoms")
 
basic::options::IntegerOptionKey
const 
local::min_coord_res ("min_coord_res")
 
basic::options::IntegerOptionKey
const 
local::max_res_span ("max_res_span")
 
basic::options::BooleanOptionKey
const 
local::require_bordering_ss ("require_bordering_ss")
 
basic::options::IntegerOptionKey
const 
local::max_loop_size ("max_loop_size")
 
basic::options::BooleanOptionKey
const 
local::helices_only ("helices_only")
 
basic::options::BooleanOptionKey
const 
local::strict_ss_changes ("strict_ss_changes")
 
basic::options::BooleanOptionKey
const 
local::append_nonlocal_residues ("append_nonlocal_residues")
 
basic::options::StringOptionKey
const 
local::allowed_elements ("allowed_elements")
 

Typedef Documentation

typedef utility::pointer::shared_ptr< MetalSiteFinderMover const > MetalSiteFinderMoverCOP
typedef utility::pointer::shared_ptr< MetalSiteFinderMover > MetalSiteFinderMoverOP

Function Documentation

int main ( int  argc,
char *  argv[] 
)

Variable Documentation

basic::Tracer TR("apps.pilot.guffysl.metal_site_finder")
static