Rosetta  2020.37
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Namespaces | Variables
basic::options::OptionKeys::cm Namespace Reference

Namespaces

 hybridize
 
 sanitize
 

Variables

BooleanOptionKey const cm
 
BooleanOptionKey const start_models_only
 
StringOptionKey const aln_format
 
BooleanOptionKey const recover_side_chains
 
FileVectorOptionKey const steal_extra_residues
 
StringOptionKey const loop_mover
 
IntegerOptionKey const loop_close_level
 
IntegerOptionKey const min_loop_size
 
IntegerOptionKey const max_loop_rebuild
 
RealOptionKey const loop_rebuild_filter
 
RealOptionKey const aln_length_filter_quantile
 
IntegerOptionKey const aln_length_filter
 
StringVectorOptionKey const seq_score
 
StringOptionKey const aligner
 
RealOptionKey const min_gap_open
 
RealOptionKey const max_gap_open
 
RealOptionKey const min_gap_extend
 
RealOptionKey const max_gap_extend
 
IntegerOptionKey const nn
 
FileVectorOptionKey const ev_map
 
FileVectorOptionKey const hh_map
 
IntegerVectorOptionKey const seeds
 
IntegerOptionKey const nremain_reset
 
RealVectorOptionKey const quota_per_silent
 
RealOptionKey const similarity_cut
 
RealOptionKey const similarity_limit
 
RealOptionKey const refsimilarity_cut
 

Variable Documentation

StringOptionKey const basic::options::OptionKeys::cm::aligner

Referenced by add_rosetta_options_6().

StringOptionKey const basic::options::OptionKeys::cm::aln_format

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cm::aln_length_filter

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::aln_length_filter_quantile

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::cm
FileVectorOptionKey const basic::options::OptionKeys::cm::ev_map

Referenced by add_rosetta_options_6().

FileVectorOptionKey const basic::options::OptionKeys::cm::hh_map

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::loop_close_level

Referenced by add_rosetta_options_6().

StringOptionKey const basic::options::OptionKeys::cm::loop_mover

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::loop_rebuild_filter

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::max_gap_extend

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::max_gap_open

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::max_loop_rebuild

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::min_gap_extend

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cm::min_gap_open

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cm::min_loop_size

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cm::nn
IntegerOptionKey const basic::options::OptionKeys::cm::nremain_reset

Referenced by add_rosetta_options_6(), and main().

RealVectorOptionKey const basic::options::OptionKeys::cm::quota_per_silent
BooleanOptionKey const basic::options::OptionKeys::cm::recover_side_chains

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::refsimilarity_cut

Referenced by add_rosetta_options_6(), and main().

IntegerVectorOptionKey const basic::options::OptionKeys::cm::seeds

Referenced by add_rosetta_options_6(), and main().

StringVectorOptionKey const basic::options::OptionKeys::cm::seq_score

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cm::similarity_cut

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cm::similarity_limit

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::start_models_only

Referenced by add_rosetta_options_6().

FileVectorOptionKey const basic::options::OptionKeys::cm::steal_extra_residues

Referenced by add_rosetta_options_6().