Rosetta  2020.37
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Functions
flexPepDocking Namespace Reference

Functions

BooleanOptionKey const flexPepDocking ("flexPepDocking")
 
StringOptionKey const params_file ("flexPepDocking:params_file")
 
IntegerOptionKey const peptide_anchor ("flexPepDocking:peptide_anchor")
 
StringOptionKey const receptor_chain ("flexPepDocking:receptor_chain")
 
StringOptionKey const peptide_chain ("flexPepDocking:peptide_chain")
 
BooleanOptionKey const pep_fold_only ("flexPepDocking:pep_fold_only")
 
BooleanOptionKey const lowres_abinitio ("flexPepDocking:lowres_abinitio")
 
BooleanOptionKey const lowres_preoptimize ("flexPepDocking:lowres_preoptimize")
 
BooleanOptionKey const flexPepDockingMinimizeOnly ("flexPepDocking:flexPepDockingMinimizeOnly")
 
BooleanOptionKey const extend_peptide ("flexPepDocking:extend_peptide")
 
BooleanOptionKey const place_peptide_on_binding_site ("flexPepDocking:place_peptide_on_binding_site")
 
IntegerOptionKey const sample_pcs ("flexPepDocking:sample_pcs")
 
BooleanOptionKey const SlideIntoContact ("flexPepDocking:SlideIntoContact")
 
BooleanOptionKey const recalculate_foldtree ("flexPepDocking:recalculate_foldtree")
 
BooleanOptionKey const pep_refine ("flexPepDocking:pep_refine")
 
BooleanOptionKey const rbMCM ("flexPepDocking:rbMCM")
 
BooleanOptionKey const torsionsMCM ("flexPepDocking:torsionsMCM")
 
BooleanOptionKey const peptide_loop_model ("flexPepDocking:peptide_loop_model")
 
BooleanOptionKey const backrub_peptide ("flexPepDocking:backrub_peptide")
 
BooleanOptionKey const boost_fa_atr ("flexPepDocking:boost_fa_atr")
 
BooleanOptionKey const ramp_fa_rep ("flexPepDocking:ramp_fa_rep")
 
BooleanOptionKey const ramp_rama ("flexPepDocking:ramp_rama")
 
BooleanOptionKey const flexpep_score_only ("flexPepDocking:flexpep_score_only")
 
FileOptionKey const ref_startstruct ("flexPepDocking:ref_startstruct")
 
BooleanOptionKey const use_cen_score ("flexPepDocking:use_cen_score")
 
BooleanOptionKey const design_peptide ("flexPepDocking:design_peptide")
 
IntegerOptionKey const rep_ramp_cycles ("flexPepDocking:rep_ramp_cycles")
 
IntegerOptionKey const mcm_cycles ("flexPepDocking:mcm_cycles")
 
RealOptionKey const random_phi_psi_preturbation ("flexPepDocking:random_phi_psi_preturbation")
 
RealOptionKey const smove_angle_range ("flexPepDocking:smove_angle_range")
 
BooleanOptionKey const min_receptor_bb ("flexPepDocking:min_receptor_bb")
 
RealOptionKey const random_trans_start ("flexPepDocking:random_trans_start")
 
RealOptionKey const random_rot_start ("flexPepDocking:random_rot_start")
 
BooleanOptionKey const flexpep_prepack ("flexPepDocking:flexpep_prepack")
 
BooleanOptionKey const flexpep_noprepack1 ("flexPepDocking:flexpep_noprepack1")
 
BooleanOptionKey const flexpep_noprepack2 ("flexPepDocking:flexpep_noprepack2")
 
RealOptionKey const score_filter ("flexPepDocking:score_filter")
 
IntegerOptionKey const hb_filter ("flexPepDocking:hb_filter")
 
IntegerOptionKey const hotspot_filter ("flexPepDocking:hotspot_filter")
 
StringOptionKey const frag5 ("flexPepDocking:frag5")
 
RealOptionKey const frag9_weight ("flexPepDocking:frag9_weight")
 
RealOptionKey const frag5_weight ("flexPepDocking:frag5_weight")
 
RealOptionKey const frag3_weight ("flexPepDocking:frag3_weight")
 
BooleanOptionKey const pSer2Asp_centroid ("flexPepDocking:pSer2Asp_centroid")
 
BooleanOptionKey const pSer2Glu_centroid ("flexPepDocking:pSer2Glu_centroid")
 
BooleanOptionKey const dumpPDB_abinitio ("flexPepDocking:dumpPDB_abinitio")
 
BooleanOptionKey const dumpPDB_lowres ("flexPepDocking:dumpPDB_lowres")
 
BooleanOptionKey const dumpPDB_hires ("flexPepDocking:dumpPDB_hires")
 

Function Documentation

BooleanOptionKey const flexPepDocking::backrub_peptide ( "flexPepDocking:backrub_peptide"  )
BooleanOptionKey const flexPepDocking::boost_fa_atr ( "flexPepDocking:boost_fa_atr"  )
BooleanOptionKey const flexPepDocking::design_peptide ( "flexPepDocking:design_peptide"  )
BooleanOptionKey const flexPepDocking::dumpPDB_abinitio ( "flexPepDocking:dumpPDB_abinitio"  )
BooleanOptionKey const flexPepDocking::dumpPDB_hires ( "flexPepDocking:dumpPDB_hires"  )
BooleanOptionKey const flexPepDocking::dumpPDB_lowres ( "flexPepDocking:dumpPDB_lowres"  )
BooleanOptionKey const flexPepDocking::extend_peptide ( "flexPepDocking:extend_peptide"  )
BooleanOptionKey const flexPepDocking::flexpep_noprepack1 ( "flexPepDocking:flexpep_noprepack1"  )
BooleanOptionKey const flexPepDocking::flexpep_noprepack2 ( "flexPepDocking:flexpep_noprepack2"  )
BooleanOptionKey const flexPepDocking::flexpep_prepack ( "flexPepDocking:flexpep_prepack"  )
BooleanOptionKey const flexPepDocking::flexpep_score_only ( "flexPepDocking:flexpep_score_only"  )
BooleanOptionKey const flexPepDocking::flexPepDocking ( "flexPepDocking"  )
BooleanOptionKey const flexPepDocking::flexPepDockingMinimizeOnly ( "flexPepDocking:flexPepDockingMinimizeOnly"  )
RealOptionKey const flexPepDocking::frag3_weight ( "flexPepDocking:frag3_weight"  )
StringOptionKey const flexPepDocking::frag5 ( "flexPepDocking:frag5"  )
RealOptionKey const flexPepDocking::frag5_weight ( "flexPepDocking:frag5_weight"  )
RealOptionKey const flexPepDocking::frag9_weight ( "flexPepDocking:frag9_weight"  )
IntegerOptionKey const flexPepDocking::hb_filter ( "flexPepDocking:hb_filter"  )
IntegerOptionKey const flexPepDocking::hotspot_filter ( "flexPepDocking:hotspot_filter"  )
BooleanOptionKey const flexPepDocking::lowres_abinitio ( "flexPepDocking:lowres_abinitio"  )
BooleanOptionKey const flexPepDocking::lowres_preoptimize ( "flexPepDocking:lowres_preoptimize"  )
IntegerOptionKey const flexPepDocking::mcm_cycles ( "flexPepDocking:mcm_cycles"  )
BooleanOptionKey const flexPepDocking::min_receptor_bb ( "flexPepDocking:min_receptor_bb"  )
StringOptionKey const flexPepDocking::params_file ( "flexPepDocking:params_file"  )
BooleanOptionKey const flexPepDocking::pep_fold_only ( "flexPepDocking:pep_fold_only"  )
BooleanOptionKey const flexPepDocking::pep_refine ( "flexPepDocking:pep_refine"  )
IntegerOptionKey const flexPepDocking::peptide_anchor ( "flexPepDocking:peptide_anchor"  )
StringOptionKey const flexPepDocking::peptide_chain ( "flexPepDocking:peptide_chain"  )
BooleanOptionKey const flexPepDocking::peptide_loop_model ( "flexPepDocking:peptide_loop_model"  )
BooleanOptionKey const flexPepDocking::place_peptide_on_binding_site ( "flexPepDocking:place_peptide_on_binding_site"  )
BooleanOptionKey const flexPepDocking::pSer2Asp_centroid ( "flexPepDocking:pSer2Asp_centroid"  )
BooleanOptionKey const flexPepDocking::pSer2Glu_centroid ( "flexPepDocking:pSer2Glu_centroid"  )
BooleanOptionKey const flexPepDocking::ramp_fa_rep ( "flexPepDocking:ramp_fa_rep"  )
BooleanOptionKey const flexPepDocking::ramp_rama ( "flexPepDocking:ramp_rama"  )
RealOptionKey const flexPepDocking::random_phi_psi_preturbation ( "flexPepDocking:random_phi_psi_preturbation"  )
RealOptionKey const flexPepDocking::random_rot_start ( "flexPepDocking:random_rot_start"  )
RealOptionKey const flexPepDocking::random_trans_start ( "flexPepDocking:random_trans_start"  )
BooleanOptionKey const flexPepDocking::rbMCM ( "flexPepDocking:rbMCM"  )
BooleanOptionKey const flexPepDocking::recalculate_foldtree ( "flexPepDocking:recalculate_foldtree"  )
StringOptionKey const flexPepDocking::receptor_chain ( "flexPepDocking:receptor_chain"  )
FileOptionKey const flexPepDocking::ref_startstruct ( "flexPepDocking:ref_startstruct"  )
IntegerOptionKey const flexPepDocking::rep_ramp_cycles ( "flexPepDocking:rep_ramp_cycles"  )
IntegerOptionKey const flexPepDocking::sample_pcs ( "flexPepDocking:sample_pcs"  )
RealOptionKey const flexPepDocking::score_filter ( "flexPepDocking:score_filter"  )
BooleanOptionKey const flexPepDocking::SlideIntoContact ( "flexPepDocking:SlideIntoContact"  )
RealOptionKey const flexPepDocking::smove_angle_range ( "flexPepDocking:smove_angle_range"  )
BooleanOptionKey const flexPepDocking::torsionsMCM ( "flexPepDocking:torsionsMCM"  )
BooleanOptionKey const flexPepDocking::use_cen_score ( "flexPepDocking:use_cen_score"  )