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Variables
utility::io::oc Namespace Reference

Variables

ocstream cout (std::cout)
 Wrapper around std::cout. More...
 
ocstream cerr (std::cerr)
 Wrapper around std::cerr. More...
 
ocstream clog (std::clog)
 Wrapper around std::clog. More...
 

Variable Documentation

ocstream utility::io::oc::cerr

Wrapper around std::cerr.

Referenced by DummyMover::apply(), utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >::basic_mpi_streambuf(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::cl_value(), correct_rama(), utility::file::create_blank_file(), utility::tag::Tag::die_for_unaccessed_options(), utility::excn::Exception::display(), utility::excn::UserCorrectableIssue::display(), utility::exit_handler(), utility::file::file_size(), utility::file::gunzip(), utility::file::gzip(), handle_assert_failure(), numeric::fourier::SHT::init(), basic::options::int2afteroption(), basic::options::intafteroption(), numeric::fourier::kiss_dct(), numeric::fourier::kiss_fftr(), numeric::fourier::kiss_fftri(), numeric::fourier::kiss_idct(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_check(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::legal_default_check(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_default_check(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::legal_default_check_write_locked(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::legal_default_report(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_default_report(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::legal_limits_report(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_limits_report(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_report(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::legal_size_report(), numeric::geometry::hashing::SixDOffsetTree::lookup(), main(), utility::options::mpi_safe_std_err(), ObjexxFCL::internal::ObserverGraph::ObserverGraph(), utility::io::izstream::open(), utility::options::OptionCollection::operator()(), ObjexxFCL::operator>>(), utility::options::OptionCollection::operator[](), output_packstat_pdb(), numeric::interpolation::Histogram< typename, typename >::read_from_db(), basic::options::real2afteroption(), basic::options::real3afteroption(), basic::options::realafteroption(), repack_test(), numeric::fourier::kiss_dct_state::resize(), numeric::fourier::kiss_fftr_state::resize(), rhiju_pdbstats(), basic::TracerImpl::safe_output(), utility::save_crash_report(), numeric::interpolation::Histogram< typename, typename >::set_params(), basic::show_time(), numeric::sin_cos_range(), utility::options::ScalarOption_T_< PathOptionKey, file::PathName >::specified_check(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::specified_check(), utility::options::VectorOption_T_< BooleanVectorOptionKey, bool >::specified_report(), numeric::geometry::hashing::SixDOffsetTree::sum_radius(), basic::ComparingTracer::t_flush(), boost::throw_exception(), utility::options::RealOption::value_of(), utility::options::RealVectorOption::value_of(), utility::options::IntegerVectorOption::value_of(), utility::options::BooleanVectorOption::value_of(), utility::options::ResidueChainVectorOption::value_of(), utility::options::BooleanOption::value_of(), utility::options::ResidueChainVectorOption::values_of(), utility::options::IntegerVectorOption::values_of(), and numeric::expression_parser::ASTPrinter::visit().

ocstream utility::io::oc::clog

Wrapper around std::clog.

ocstream utility::io::oc::cout

Wrapper around std::cout.

Referenced by utility::Inline_File_Provider::add_input_file(), utility::signals::PausableSignalHub< ResultType, Signal >::after_send(), align_pdbs(), align_pose_general(), numeric::deriv::angle_p1_deriv(), IdentifyCDRClusters::apply(), HDmakerMover::apply(), GlycanClashCheckMover::apply(), DockGlycansProtocol::apply(), HBondReporter::apply(), utility::py::Base::Base(), calc_dihedral_rms(), calculate_pairwise_RMSD(), calculate_sasa(), basic::TracerImpl::calculate_visibility(), check_alignment_RMSD_cutoff(), numeric::geometry::hashing::xyzStripeHash::clash_amount(), cluster_test(), RNA_DeNovoJobQueen::complete_larval_job_maturation(), convert(), correlation(), create_base_pair_step_database_test(), utility::file::create_blank_file(), create_bp_jump_database_test(), create_cs_rosetta_rna_scorefxn(), create_rna_vall_torsions_test(), create_scorefxn(), cs_rosetta_rna_pdb(), do_color_by_score(), extract_pdbs_test(), figure_out_fold_tree(), figure_out_which_sequence_is_template(), BuildFullModel::fill_and_sample_full_model(), filter_combine_long_loop(), basic::TracerImpl::final_stream(), utility::py::Base::foo_int(), utility::py::Base::foo_string(), utility::py::Base::foo_value(), utility::py::Base::foo_value_sp(), full_length_rmsd_over_reside_list_general(), get_exclid(), get_obligated_rna_pairings(), utility::Inline_File_Provider::get_ostream(), utility::Inline_File_Provider::get_sstream(), graft_pdb(), utility::file::gunzip(), utility::file::gzip(), harvest_motifs_one(), harvest_scores(), basic::options::int2afteroption(), basic::options::intafteroption(), numeric::kdtree::is_legal_greater_than(), numeric::kdtree::is_legal_less_than(), ligand_rmsd(), utility::options::OptionCollection::load(), utility::options::OptionCollection::load_options_from_stream(), main(), mg_modeler_test(), minimize_test(), mutate_residue(), mutate_residues_wrapper(), my_main(), nucleobase_probe_score_test(), o2prime_packer(), utility::io::ozstream::open_append(), basic::options::optional_positive_intafteroption(), output_packstat_pdb(), output_score(), output_superimposed_pdb(), pdb_to_silent_file(), post_rebuild_bulge_assembly(), predict_chem_map_test(), prepare_threaded_model(), basic::sampling::orientations::QuaternionGrid::print(), utility::graph::DirectedNode::print(), PhProtocol::print_hbonds(), print_pdb_info(), numeric::RocCurve::print_roc_curve(), print_scores(), numeric::kdtree::print_tree(), numeric::kinematic_closure::printMatrix(), numeric::kinematic_closure::printTranspose(), numeric::kinematic_closure::printVector(), process_pose(), quick_score_test(), numeric::read_tensor_from_file(), basic::options::real2afteroption(), basic::options::real3afteroption(), basic::options::realafteroption(), DockGlycansProtocol::record_pose_metrics(), repack_test(), basic::gpu::Timer::Report(), resample_full_model_test(), utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >::reset_state(), reverse_convert(), rhiju_pdbstats(), rna_denovo(), rna_denovo_legacy(), rna_design_test(), rna_features_from_pose(), rna_fullatom_minimize_test(), rna_motif_test(), rna_score_test(), rna_sequence_recovery_metrics(), rna_suitename(), rna_thread_test(), numeric::model_quality::rsym_evector(), run_mc(), sample_torsions(), utility::py::OverloadTest::self_pure_test_virtual_p(), utility::py::OverloadTest::self_pure_test_virtual_ref(), utility::py::OverloadTest::self_test_virtual_p(), utility::py::OverloadTest::self_test_virtual_ref(), basic::TracerImpl::set_default_final_stream(), basic::TracerImpl::set_tracer_options(), setup_mask(), DougsDockDesignMinimizeMagicMover::setup_pert_foldtree(), setup_rna_minimizer(), numeric::sin_cos_range(), slice_ellipsoid_envelope(), slice_sample_res_and_surrounding(), basic::options::stringafteroption(), superimpose_pdb(), svm_load_model(), swa_rna_cluster(), utility::sys_sleep(), numeric::kinematic_closure::test_bondangle(), numeric::kinematic_closure::test_dixon(), numeric::kinematic_closure::test_eucDistance(), numeric::kinematic_closure::test_scpn(), test_sugar(), numeric::kinematic_closure::test_torsion(), basic::options::truefalseoption(), utility::py::Value::Value(), write_base_pair_step_to_silent_struct(), utility::options::OptionCollection::~OptionCollection(), and utility::py::Value::~Value().