Rosetta  2020.37
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Functions
cyclic_peptide Namespace Reference

Functions

BooleanOptionKey const cyclic_peptide ("cyclic_peptide")
 
StringOptionKey const cyclization_type ("cyclic_peptide:cyclization_type")
 
BooleanOptionKey const use_chainbreak_energy ("cyclic_peptide:use_chainbreak_energy")
 
StringOptionKey const rand_checkpoint_file ("cyclic_peptide:rand_checkpoint_file")
 
StringOptionKey const checkpoint_file ("cyclic_peptide:checkpoint_file")
 
StringOptionKey const checkpoint_job_identifier ("cyclic_peptide:checkpoint_job_identifier")
 
IntegerVectorOptionKey const exclude_residues_from_rms ("cyclic_peptide:exclude_residues_from_rms")
 
StringOptionKey const default_rama_sampling_table ("cyclic_peptide:default_rama_sampling_table")
 
StringVectorOptionKey const rama_sampling_table_by_res ("cyclic_peptide:rama_sampling_table_by_res")
 
StringOptionKey const sequence_file ("cyclic_peptide:sequence_file")
 
IntegerOptionKey const genkic_closure_attempts ("cyclic_peptide:genkic_closure_attempts")
 
IntegerOptionKey const genkic_min_solution_count ("cyclic_peptide:genkic_min_solution_count")
 
BooleanOptionKey const cyclic_permutations ("cyclic_peptide:cyclic_permutations")
 
BooleanOptionKey const use_rama_filter ("cyclic_peptide:use_rama_filter")
 
RealOptionKey const rama_cutoff ("cyclic_peptide:rama_cutoff")
 
RealOptionKey const high_hbond_weight_multiplier ("cyclic_peptide:high_hbond_weight_multiplier")
 
RealOptionKey const min_genkic_hbonds ("cyclic_peptide:min_genkic_hbonds")
 
RealOptionKey const min_final_hbonds ("cyclic_peptide:min_final_hbonds")
 
RealOptionKey const total_energy_cutoff ("cyclic_peptide:total_energy_cutoff")
 
RealOptionKey const hbond_energy_cutoff ("cyclic_peptide:hbond_energy_cutoff")
 
BooleanOptionKey const do_not_count_adjacent_res_hbonds ("cyclic_peptide:do_not_count_adjacent_res_hbonds")
 
IntegerOptionKey const fast_relax_rounds ("cyclic_peptide:fast_relax_rounds")
 
BooleanOptionKey const count_sc_hbonds ("cyclic_peptide:count_sc_hbonds")
 
BooleanOptionKey const require_disulfides ("cyclic_peptide:require_disulfides")
 
RealOptionKey const disulf_cutoff_prerelax ("cyclic_peptide:disulf_cutoff_prerelax")
 
RealOptionKey const disulf_cutoff_postrelax ("cyclic_peptide:disulf_cutoff_postrelax")
 
RealVectorOptionKey const user_set_alpha_dihedrals ("cyclic_peptide:user_set_alpha_dihedrals")
 
RealOptionKey const user_set_alpha_dihedral_perturbation ("cyclic_peptide:user_set_alpha_dihedral_perturbation")
 
RealOptionKey const bondlength_perturbation_magnitude ("cyclic_peptide:bondlength_perturbation_magnitude")
 
RealOptionKey const bondangle_perturbation_magnitude ("cyclic_peptide:bondangle_perturbation_magnitude")
 
BooleanOptionKey const filter_oversaturated_hbond_acceptors ("cyclic_peptide:filter_oversaturated_hbond_acceptors")
 
RealOptionKey const hbond_acceptor_energy_cutoff ("cyclic_peptide:hbond_acceptor_energy_cutoff")
 
RealOptionKey const sample_cis_pro_frequency ("cyclic_peptide:sample_cis_pro_frequency")
 
BooleanOptionKey const design_peptide ("cyclic_peptide:design_peptide")
 
FileOptionKey const allowed_residues_by_position ("cyclic_peptide:allowed_residues_by_position")
 
BooleanOptionKey const prohibit_D_at_negative_phi ("cyclic_peptide:prohibit_D_at_negative_phi")
 
BooleanOptionKey const prohibit_L_at_positive_phi ("cyclic_peptide:prohibit_L_at_positive_phi")
 
FileOptionKey const L_alpha_comp_file ("cyclic_peptide:L_alpha_comp_file")
 
FileOptionKey const D_alpha_comp_file ("cyclic_peptide:D_alpha_comp_file")
 
FileOptionKey const L_beta_comp_file ("cyclic_peptide:L_beta_comp_file")
 
FileOptionKey const D_beta_comp_file ("cyclic_peptide:D_beta_comp_file")
 
IntegerOptionKey const angle_relax_rounds ("cyclic_peptide:angle_relax_rounds")
 
IntegerOptionKey const angle_length_relax_rounds ("cyclic_peptide:angle_length_relax_rounds")
 
IntegerOptionKey const cartesian_relax_rounds ("cyclic_peptide:cartesian_relax_rounds")
 
BooleanOptionKey const use_classic_rama_for_sampling ("cyclic_peptide:use_classic_rama_for_sampling")
 
IntegerVectorOptionKey const n_methyl_positions ("cyclic_peptide:n_methyl_positions")
 
IntegerOptionKey const lariat_sidechain_index ("cyclic_peptide:lariat_sidechain_index")
 
IntegerVectorOptionKey const sidechain_isopeptide_indices ("cyclic_peptide:sidechain_isopeptide_indices")
 
IntegerVectorOptionKey const TBMB_positions ("cyclic_peptide:TBMB_positions")
 
BooleanOptionKey const use_TBMB_filters ("cyclic_peptide:use_TBMB_filters")
 
RealOptionKey const TBMB_sidechain_distance_filter_multiplier ("cyclic_peptide:TBMB_sidechain_distance_filter_multiplier")
 
RealOptionKey const TBMB_constraints_energy_filter_multiplier ("cyclic_peptide:TBMB_constraints_energy_filter_multiplier")
 
BooleanOptionKey const link_all_cys_with_TBMB ("cyclic_peptide:link_all_cys_with_TBMB")
 
IntegerVectorOptionKey const TMA_positions ("cyclic_peptide:TMA_positions")
 
BooleanOptionKey const use_TMA_filters ("cyclic_peptide:use_TMA_filters")
 
RealOptionKey const TMA_sidechain_distance_filter_multiplier ("cyclic_peptide:TMA_sidechain_distance_filter_multiplier")
 
RealOptionKey const TMA_constraints_energy_filter_multiplier ("cyclic_peptide:TMA_constraints_energy_filter_multiplier")
 
StringVectorOptionKey const square_pyramidal_metal_positions ("cyclic_peptide:square_pyramidal_metal_positions")
 
BooleanOptionKey const use_square_pyramidal_metal_filters ("cyclic_peptide:use_square_pyramidal_metal_filters")
 
RealOptionKey const square_pyramidal_metal_sidechain_distance_filter_multiplier ("cyclic_peptide:square_pyramidal_metal_sidechain_distance_filter_multiplier")
 
RealOptionKey const square_pyramidal_metal_constraints_energy_filter_multiplier ("cyclic_peptide:square_pyramidal_metal_constraints_energy_filter_multiplier")
 
StringVectorOptionKey const square_planar_metal_positions ("cyclic_peptide:square_planar_metal_positions")
 
BooleanOptionKey const use_square_planar_metal_filters ("cyclic_peptide:use_square_planar_metal_filters")
 
RealOptionKey const square_planar_metal_sidechain_distance_filter_multiplier ("cyclic_peptide:square_planar_metal_sidechain_distance_filter_multiplier")
 
RealOptionKey const square_planar_metal_constraints_energy_filter_multiplier ("cyclic_peptide:square_planar_metal_constraints_energy_filter_multiplier")
 
StringVectorOptionKey const trigonal_pyramidal_metal_positions ("cyclic_peptide:trigonal_pyramidal_metal_positions")
 
BooleanOptionKey const use_trigonal_pyramidal_metal_filters ("cyclic_peptide:use_trigonal_pyramidal_metal_filters")
 
RealOptionKey const trigonal_pyramidal_metal_sidechain_distance_filter_multiplier ("cyclic_peptide:trigonal_pyramidal_metal_sidechain_distance_filter_multiplier")
 
RealOptionKey const trigonal_pyramidal_metal_constraints_energy_filter_multiplier ("cyclic_peptide:trigonal_pyramidal_metal_constraints_energy_filter_multiplier")
 
StringVectorOptionKey const trigonal_planar_metal_positions ("cyclic_peptide:trigonal_planar_metal_positions")
 
BooleanOptionKey const use_trigonal_planar_metal_filters ("cyclic_peptide:use_trigonal_planar_metal_filters")
 
RealOptionKey const trigonal_planar_metal_sidechain_distance_filter_multiplier ("cyclic_peptide:trigonal_planar_metal_sidechain_distance_filter_multiplier")
 
RealOptionKey const trigonal_planar_metal_constraints_energy_filter_multiplier ("cyclic_peptide:trigonal_planar_metal_constraints_energy_filter_multiplier")
 
StringVectorOptionKey const tetrahedral_metal_positions ("cyclic_peptide:tetrahedral_metal_positions")
 
BooleanOptionKey const use_tetrahedral_metal_filters ("cyclic_peptide:use_tetrahedral_metal_filters")
 
RealOptionKey const tetrahedral_metal_sidechain_distance_filter_multiplier ("cyclic_peptide:tetrahedral_metal_sidechain_distance_filter_multiplier")
 
RealOptionKey const tetrahedral_metal_constraints_energy_filter_multiplier ("cyclic_peptide:tetrahedral_metal_constraints_energy_filter_multiplier")
 
StringVectorOptionKey const octahedral_metal_positions ("cyclic_peptide:octahedral_metal_positions")
 
BooleanOptionKey const use_octahedral_metal_filters ("cyclic_peptide:use_octahedral_metal_filters")
 
RealOptionKey const octahedral_metal_sidechain_distance_filter_multiplier ("cyclic_peptide:octahedral_metal_sidechain_distance_filter_multiplier")
 
RealOptionKey const octahedral_metal_constraints_energy_filter_multiplier ("cyclic_peptide:octahedral_metal_constraints_energy_filter_multiplier")
 
IntegerOptionKey const require_symmetry_repeats ("cyclic_peptide:require_symmetry_repeats")
 
BooleanOptionKey const require_symmetry_mirroring ("cyclic_peptide:require_symmetry_mirroring")
 
RealOptionKey const require_symmetry_angle_threshold ("cyclic_peptide:require_symmetry_angle_threshold")
 
RealOptionKey const require_symmetry_perturbation ("cyclic_peptide:require_symmetry_perturbation")
 
BooleanOptionKey const MPI_auto_2level_distribution ("cyclic_peptide:MPI_auto_2level_distribution")
 
IntegerVectorOptionKey const MPI_processes_by_level ("cyclic_peptide:MPI_processes_by_level")
 
IntegerVectorOptionKey const MPI_batchsize_by_level ("cyclic_peptide:MPI_batchsize_by_level")
 
StringOptionKey const MPI_sort_by ("cyclic_peptide:MPI_sort_by")
 
BooleanOptionKey const MPI_choose_highest ("cyclic_peptide:MPI_choose_highest")
 
RealOptionKey const MPI_output_fraction ("cyclic_peptide:MPI_output_fraction")
 
IntegerOptionKey const MPI_stop_after_time ("cyclic_peptide:MPI_stop_after_time")
 
RealOptionKey const MPI_pnear_lambda ("cyclic_peptide:MPI_pnear_lambda")
 
RealOptionKey const MPI_pnear_kbt ("cyclic_peptide:MPI_pnear_kbt")
 
IntegerOptionKey const threads_per_worker ("cyclic_peptide:threads_per_worker")
 
BooleanOptionKey const compute_rmsd_to_lowest ("cyclic_peptide:compute_rmsd_to_lowest")
 
RealOptionKey const compute_pnear_to_this_fract ("cyclic_peptide:compute_pnear_to_this_fract")
 
BooleanOptionKey const compute_ensemble_sasa_metrics ("cyclic_peptide:compute_ensemble_sasa_metrics")
 

Function Documentation

FileOptionKey const cyclic_peptide::allowed_residues_by_position ( "cyclic_peptide:allowed_residues_by_position"  )
IntegerOptionKey const cyclic_peptide::angle_length_relax_rounds ( "cyclic_peptide:angle_length_relax_rounds"  )
IntegerOptionKey const cyclic_peptide::angle_relax_rounds ( "cyclic_peptide:angle_relax_rounds"  )
RealOptionKey const cyclic_peptide::bondangle_perturbation_magnitude ( "cyclic_peptide:bondangle_perturbation_magnitude"  )
RealOptionKey const cyclic_peptide::bondlength_perturbation_magnitude ( "cyclic_peptide:bondlength_perturbation_magnitude"  )
IntegerOptionKey const cyclic_peptide::cartesian_relax_rounds ( "cyclic_peptide:cartesian_relax_rounds"  )
StringOptionKey const cyclic_peptide::checkpoint_file ( "cyclic_peptide:checkpoint_file"  )
StringOptionKey const cyclic_peptide::checkpoint_job_identifier ( "cyclic_peptide:checkpoint_job_identifier"  )
BooleanOptionKey const cyclic_peptide::compute_ensemble_sasa_metrics ( "cyclic_peptide:compute_ensemble_sasa_metrics"  )
RealOptionKey const cyclic_peptide::compute_pnear_to_this_fract ( "cyclic_peptide:compute_pnear_to_this_fract"  )
BooleanOptionKey const cyclic_peptide::compute_rmsd_to_lowest ( "cyclic_peptide:compute_rmsd_to_lowest"  )
BooleanOptionKey const cyclic_peptide::count_sc_hbonds ( "cyclic_peptide:count_sc_hbonds"  )
BooleanOptionKey const cyclic_peptide::cyclic_peptide ( "cyclic_peptide"  )
BooleanOptionKey const cyclic_peptide::cyclic_permutations ( "cyclic_peptide:cyclic_permutations"  )
StringOptionKey const cyclic_peptide::cyclization_type ( "cyclic_peptide:cyclization_type"  )
FileOptionKey const cyclic_peptide::D_alpha_comp_file ( "cyclic_peptide:D_alpha_comp_file"  )
FileOptionKey const cyclic_peptide::D_beta_comp_file ( "cyclic_peptide:D_beta_comp_file"  )
StringOptionKey const cyclic_peptide::default_rama_sampling_table ( "cyclic_peptide:default_rama_sampling_table"  )
BooleanOptionKey const cyclic_peptide::design_peptide ( "cyclic_peptide:design_peptide"  )
RealOptionKey const cyclic_peptide::disulf_cutoff_postrelax ( "cyclic_peptide:disulf_cutoff_postrelax"  )
RealOptionKey const cyclic_peptide::disulf_cutoff_prerelax ( "cyclic_peptide:disulf_cutoff_prerelax"  )
BooleanOptionKey const cyclic_peptide::do_not_count_adjacent_res_hbonds ( "cyclic_peptide:do_not_count_adjacent_res_hbonds"  )
IntegerVectorOptionKey const cyclic_peptide::exclude_residues_from_rms ( "cyclic_peptide:exclude_residues_from_rms"  )
IntegerOptionKey const cyclic_peptide::fast_relax_rounds ( "cyclic_peptide:fast_relax_rounds"  )
BooleanOptionKey const cyclic_peptide::filter_oversaturated_hbond_acceptors ( "cyclic_peptide:filter_oversaturated_hbond_acceptors"  )
IntegerOptionKey const cyclic_peptide::genkic_closure_attempts ( "cyclic_peptide:genkic_closure_attempts"  )
IntegerOptionKey const cyclic_peptide::genkic_min_solution_count ( "cyclic_peptide:genkic_min_solution_count"  )
RealOptionKey const cyclic_peptide::hbond_acceptor_energy_cutoff ( "cyclic_peptide:hbond_acceptor_energy_cutoff"  )
RealOptionKey const cyclic_peptide::hbond_energy_cutoff ( "cyclic_peptide:hbond_energy_cutoff"  )
RealOptionKey const cyclic_peptide::high_hbond_weight_multiplier ( "cyclic_peptide:high_hbond_weight_multiplier"  )
FileOptionKey const cyclic_peptide::L_alpha_comp_file ( "cyclic_peptide:L_alpha_comp_file"  )
FileOptionKey const cyclic_peptide::L_beta_comp_file ( "cyclic_peptide:L_beta_comp_file"  )
IntegerOptionKey const cyclic_peptide::lariat_sidechain_index ( "cyclic_peptide:lariat_sidechain_index"  )
BooleanOptionKey const cyclic_peptide::link_all_cys_with_TBMB ( "cyclic_peptide:link_all_cys_with_TBMB"  )
RealOptionKey const cyclic_peptide::min_final_hbonds ( "cyclic_peptide:min_final_hbonds"  )
RealOptionKey const cyclic_peptide::min_genkic_hbonds ( "cyclic_peptide:min_genkic_hbonds"  )
BooleanOptionKey const cyclic_peptide::MPI_auto_2level_distribution ( "cyclic_peptide:MPI_auto_2level_distribution"  )
IntegerVectorOptionKey const cyclic_peptide::MPI_batchsize_by_level ( "cyclic_peptide:MPI_batchsize_by_level"  )
BooleanOptionKey const cyclic_peptide::MPI_choose_highest ( "cyclic_peptide:MPI_choose_highest"  )
RealOptionKey const cyclic_peptide::MPI_output_fraction ( "cyclic_peptide:MPI_output_fraction"  )
RealOptionKey const cyclic_peptide::MPI_pnear_kbt ( "cyclic_peptide:MPI_pnear_kbt"  )
RealOptionKey const cyclic_peptide::MPI_pnear_lambda ( "cyclic_peptide:MPI_pnear_lambda"  )
IntegerVectorOptionKey const cyclic_peptide::MPI_processes_by_level ( "cyclic_peptide:MPI_processes_by_level"  )
StringOptionKey const cyclic_peptide::MPI_sort_by ( "cyclic_peptide:MPI_sort_by"  )
IntegerOptionKey const cyclic_peptide::MPI_stop_after_time ( "cyclic_peptide:MPI_stop_after_time"  )
IntegerVectorOptionKey const cyclic_peptide::n_methyl_positions ( "cyclic_peptide:n_methyl_positions"  )
RealOptionKey const cyclic_peptide::octahedral_metal_constraints_energy_filter_multiplier ( "cyclic_peptide:octahedral_metal_constraints_energy_filter_multiplier"  )
StringVectorOptionKey const cyclic_peptide::octahedral_metal_positions ( "cyclic_peptide:octahedral_metal_positions"  )
RealOptionKey const cyclic_peptide::octahedral_metal_sidechain_distance_filter_multiplier ( "cyclic_peptide:octahedral_metal_sidechain_distance_filter_multiplier"  )
BooleanOptionKey const cyclic_peptide::prohibit_D_at_negative_phi ( "cyclic_peptide:prohibit_D_at_negative_phi"  )
BooleanOptionKey const cyclic_peptide::prohibit_L_at_positive_phi ( "cyclic_peptide:prohibit_L_at_positive_phi"  )
RealOptionKey const cyclic_peptide::rama_cutoff ( "cyclic_peptide:rama_cutoff"  )
StringVectorOptionKey const cyclic_peptide::rama_sampling_table_by_res ( "cyclic_peptide:rama_sampling_table_by_res"  )
StringOptionKey const cyclic_peptide::rand_checkpoint_file ( "cyclic_peptide:rand_checkpoint_file"  )
BooleanOptionKey const cyclic_peptide::require_disulfides ( "cyclic_peptide:require_disulfides"  )
RealOptionKey const cyclic_peptide::require_symmetry_angle_threshold ( "cyclic_peptide:require_symmetry_angle_threshold"  )
BooleanOptionKey const cyclic_peptide::require_symmetry_mirroring ( "cyclic_peptide:require_symmetry_mirroring"  )
RealOptionKey const cyclic_peptide::require_symmetry_perturbation ( "cyclic_peptide:require_symmetry_perturbation"  )
IntegerOptionKey const cyclic_peptide::require_symmetry_repeats ( "cyclic_peptide:require_symmetry_repeats"  )
RealOptionKey const cyclic_peptide::sample_cis_pro_frequency ( "cyclic_peptide:sample_cis_pro_frequency"  )
StringOptionKey const cyclic_peptide::sequence_file ( "cyclic_peptide:sequence_file"  )
IntegerVectorOptionKey const cyclic_peptide::sidechain_isopeptide_indices ( "cyclic_peptide:sidechain_isopeptide_indices"  )
RealOptionKey const cyclic_peptide::square_planar_metal_constraints_energy_filter_multiplier ( "cyclic_peptide:square_planar_metal_constraints_energy_filter_multiplier"  )
StringVectorOptionKey const cyclic_peptide::square_planar_metal_positions ( "cyclic_peptide:square_planar_metal_positions"  )
RealOptionKey const cyclic_peptide::square_planar_metal_sidechain_distance_filter_multiplier ( "cyclic_peptide:square_planar_metal_sidechain_distance_filter_multiplier"  )
RealOptionKey const cyclic_peptide::square_pyramidal_metal_constraints_energy_filter_multiplier ( "cyclic_peptide:square_pyramidal_metal_constraints_energy_filter_multiplier"  )
StringVectorOptionKey const cyclic_peptide::square_pyramidal_metal_positions ( "cyclic_peptide:square_pyramidal_metal_positions"  )
RealOptionKey const cyclic_peptide::square_pyramidal_metal_sidechain_distance_filter_multiplier ( "cyclic_peptide:square_pyramidal_metal_sidechain_distance_filter_multiplier"  )
RealOptionKey const cyclic_peptide::TBMB_constraints_energy_filter_multiplier ( "cyclic_peptide:TBMB_constraints_energy_filter_multiplier"  )
IntegerVectorOptionKey const cyclic_peptide::TBMB_positions ( "cyclic_peptide:TBMB_positions"  )
RealOptionKey const cyclic_peptide::TBMB_sidechain_distance_filter_multiplier ( "cyclic_peptide:TBMB_sidechain_distance_filter_multiplier"  )
RealOptionKey const cyclic_peptide::tetrahedral_metal_constraints_energy_filter_multiplier ( "cyclic_peptide:tetrahedral_metal_constraints_energy_filter_multiplier"  )
StringVectorOptionKey const cyclic_peptide::tetrahedral_metal_positions ( "cyclic_peptide:tetrahedral_metal_positions"  )
RealOptionKey const cyclic_peptide::tetrahedral_metal_sidechain_distance_filter_multiplier ( "cyclic_peptide:tetrahedral_metal_sidechain_distance_filter_multiplier"  )
IntegerOptionKey const cyclic_peptide::threads_per_worker ( "cyclic_peptide:threads_per_worker"  )
RealOptionKey const cyclic_peptide::TMA_constraints_energy_filter_multiplier ( "cyclic_peptide:TMA_constraints_energy_filter_multiplier"  )
IntegerVectorOptionKey const cyclic_peptide::TMA_positions ( "cyclic_peptide:TMA_positions"  )
RealOptionKey const cyclic_peptide::TMA_sidechain_distance_filter_multiplier ( "cyclic_peptide:TMA_sidechain_distance_filter_multiplier"  )
RealOptionKey const cyclic_peptide::total_energy_cutoff ( "cyclic_peptide:total_energy_cutoff"  )
RealOptionKey const cyclic_peptide::trigonal_planar_metal_constraints_energy_filter_multiplier ( "cyclic_peptide:trigonal_planar_metal_constraints_energy_filter_multiplier"  )
StringVectorOptionKey const cyclic_peptide::trigonal_planar_metal_positions ( "cyclic_peptide:trigonal_planar_metal_positions"  )
RealOptionKey const cyclic_peptide::trigonal_planar_metal_sidechain_distance_filter_multiplier ( "cyclic_peptide:trigonal_planar_metal_sidechain_distance_filter_multiplier"  )
RealOptionKey const cyclic_peptide::trigonal_pyramidal_metal_constraints_energy_filter_multiplier ( "cyclic_peptide:trigonal_pyramidal_metal_constraints_energy_filter_multiplier"  )
StringVectorOptionKey const cyclic_peptide::trigonal_pyramidal_metal_positions ( "cyclic_peptide:trigonal_pyramidal_metal_positions"  )
RealOptionKey const cyclic_peptide::trigonal_pyramidal_metal_sidechain_distance_filter_multiplier ( "cyclic_peptide:trigonal_pyramidal_metal_sidechain_distance_filter_multiplier"  )
BooleanOptionKey const cyclic_peptide::use_chainbreak_energy ( "cyclic_peptide:use_chainbreak_energy"  )
BooleanOptionKey const cyclic_peptide::use_classic_rama_for_sampling ( "cyclic_peptide:use_classic_rama_for_sampling"  )
BooleanOptionKey const cyclic_peptide::use_octahedral_metal_filters ( "cyclic_peptide:use_octahedral_metal_filters"  )
BooleanOptionKey const cyclic_peptide::use_rama_filter ( "cyclic_peptide:use_rama_filter"  )
BooleanOptionKey const cyclic_peptide::use_square_planar_metal_filters ( "cyclic_peptide:use_square_planar_metal_filters"  )
BooleanOptionKey const cyclic_peptide::use_square_pyramidal_metal_filters ( "cyclic_peptide:use_square_pyramidal_metal_filters"  )
BooleanOptionKey const cyclic_peptide::use_TBMB_filters ( "cyclic_peptide:use_TBMB_filters"  )
BooleanOptionKey const cyclic_peptide::use_tetrahedral_metal_filters ( "cyclic_peptide:use_tetrahedral_metal_filters"  )
BooleanOptionKey const cyclic_peptide::use_TMA_filters ( "cyclic_peptide:use_TMA_filters"  )
BooleanOptionKey const cyclic_peptide::use_trigonal_planar_metal_filters ( "cyclic_peptide:use_trigonal_planar_metal_filters"  )
BooleanOptionKey const cyclic_peptide::use_trigonal_pyramidal_metal_filters ( "cyclic_peptide:use_trigonal_pyramidal_metal_filters"  )
RealOptionKey const cyclic_peptide::user_set_alpha_dihedral_perturbation ( "cyclic_peptide:user_set_alpha_dihedral_perturbation"  )
RealVectorOptionKey const cyclic_peptide::user_set_alpha_dihedrals ( "cyclic_peptide:user_set_alpha_dihedrals"  )