Rosetta  2021.16
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Namespaces | Functions
OptionKeys.cc.gen15.hh File Reference

Namespaces

 wum
 
 blivens
 
 blivens::disulfide_scorer
 
 cmiles
 
 cmiles::kcluster
 
 cmiles::jumping
 
 crossmatch
 
 dwkulp
 
 evolution
 
 james
 
 krassk
 
 loodo
 
 murphp
 
 peptide_deriver
 
 phil
 
 ralford
 
 ralford::dump_rotamers
 
 robert
 
 rot_anl
 
 smhybrid
 
 tcrmodel
 
 threadsc
 
 ufv
 
 ufv::insert
 
 willmatch
 
 PDB_diagnostic
 
 testing
 

Functions

IntegerOptionKey const wum::memory_limit ("wum:memory_limit")
 
StringOptionKey const wum::extra_scorefxn ("wum:extra_scorefxn")
 
FileOptionKey const wum::extra_scorefxn_ref_structure ("wum:extra_scorefxn_ref_structure")
 
IntegerOptionKey const wum::extra_scorefxn_relax ("wum:extra_scorefxn_relax")
 
RealOptionKey const wum::trim_proportion ("wum:trim_proportion")
 
BooleanOptionKey const blivens::blivens ("blivens")
 
BooleanOptionKey const blivens::disulfide_scorer::disulfide_scorer ("blivens:disulfide_scorer")
 
RealOptionKey const blivens::disulfide_scorer::nds_prob ("blivens:disulfide_scorer:nds_prob")
 
RealOptionKey const blivens::disulfide_scorer::cys_prob ("blivens:disulfide_scorer:cys_prob")
 
StringOptionKey const blivens::score_type ("blivens:score_type")
 
BooleanOptionKey const cmiles::cmiles ("cmiles")
 
BooleanOptionKey const cmiles::kcluster::kcluster ("cmiles:kcluster")
 
IntegerOptionKey const cmiles::kcluster::num_clusters ("cmiles:kcluster:num_clusters")
 
BooleanOptionKey const cmiles::jumping::jumping ("cmiles:jumping")
 
IntegerOptionKey const cmiles::jumping::resi ("cmiles:jumping:resi")
 
IntegerOptionKey const cmiles::jumping::resj ("cmiles:jumping:resj")
 
BooleanOptionKey const crossmatch::crossmatch ("crossmatch")
 
RealOptionKey const crossmatch::clash_dis ("crossmatch:clash_dis")
 
BooleanOptionKey const dwkulp::dwkulp ("dwkulp")
 
StringOptionKey const dwkulp::forcePolyAAfragments ("dwkulp:forcePolyAAfragments")
 
BooleanOptionKey const evolution::evolution ("evolution")
 
FileVectorOptionKey const evolution::parentlist ("evolution:parentlist")
 
FileVectorOptionKey const evolution::childlist ("evolution:childlist")
 
StringOptionKey const evolution::action ("evolution:action")
 
RealOptionKey const evolution::rms_threshold ("evolution:rms_threshold")
 
RealOptionKey const evolution::rms_topmargin ("evolution:rms_topmargin")
 
StringOptionKey const evolution::targetdir ("evolution:targetdir")
 
RealOptionKey const evolution::padding_score_filter ("evolution:padding_score_filter")
 
RealOptionKey const evolution::padding_stage2_filter ("evolution:padding_stage2_filter")
 
BooleanOptionKey const james::james ("james")
 
IntegerOptionKey const james::min_seqsep ("james:min_seqsep")
 
StringVectorOptionKey const james::atom_names ("james:atom_names")
 
RealVectorOptionKey const james::dist_thresholds ("james:dist_thresholds")
 
RealVectorOptionKey const james::torsion_thresholds ("james:torsion_thresholds")
 
BooleanOptionKey const james::debug ("james:debug")
 
RealOptionKey const james::real ("james:real")
 
IntegerOptionKey const james::n_designs ("james:n_designs")
 
BooleanOptionKey const james::thread_unaligned ("james:thread_unaligned")
 
BooleanOptionKey const krassk::krassk ("krassk")
 
BooleanOptionKey const krassk::tail_mode ("krassk:tail_mode")
 
IntegerOptionKey const krassk::tail_mode_name ("krassk:tail_mode_name")
 
StringOptionKey const krassk::tail_output_file_name ("krassk:tail_output_file_name")
 
BooleanOptionKey const loodo::loodo ("loodo")
 
IntegerOptionKey const loodo::ins_begin ("loodo:ins_begin")
 
StringOptionKey const loodo::cap ("loodo:cap")
 
StringOptionKey const loodo::bot ("loodo:bot")
 
IntegerVectorOptionKey const loodo::fragAlength ("loodo:fragAlength")
 
IntegerVectorOptionKey const loodo::fragBlength ("loodo:fragBlength")
 
IntegerOptionKey const loodo::known ("loodo:known")
 
StringOptionKey const loodo::fragAnative ("loodo:fragAnative")
 
StringOptionKey const loodo::fragBnative ("loodo:fragBnative")
 
StringOptionKey const loodo::gridligpath ("loodo:gridligpath")
 
BooleanOptionKey const loodo::debug ("loodo:debug")
 
RealOptionKey const loodo::ca_ratio ("loodo:ca_ratio")
 
RealOptionKey const loodo::distance_tolerance ("loodo:distance_tolerance")
 
RealOptionKey const loodo::euler_tolerance ("loodo:euler_tolerance")
 
IntegerOptionKey const loodo::num_frags ("loodo:num_frags")
 
StringOptionKey const loodo::use_fraglib ("loodo:use_fraglib")
 
StringOptionKey const loodo::use_fraglibsc ("loodo:use_fraglibsc")
 
BooleanOptionKey const loodo::com_in_grid ("loodo:com_in_grid")
 
BooleanOptionKey const loodo::loud ("loodo:loud")
 
BooleanOptionKey const loodo::dump_all_As ("loodo:dump_all_As")
 
BooleanOptionKey const loodo::dump_all_Bs ("loodo:dump_all_Bs")
 
StringOptionKey const loodo::caphit_rt_file ("loodo:caphit_rt_file")
 
BooleanOptionKey const murphp::murphp ("murphp")
 
StringOptionKey const murphp::inv_kin_lig_loop_design_filename ("murphp:inv_kin_lig_loop_design_filename")
 
BooleanOptionKey const peptide_deriver::peptide_deriver ("peptide_deriver")
 
IntegerVectorOptionKey const peptide_deriver::pep_lengths ("peptide_deriver:pep_lengths")
 
BooleanOptionKey const peptide_deriver::skip_zero_isc ("peptide_deriver:skip_zero_isc")
 
BooleanOptionKey const peptide_deriver::dump_peptide_pose ("peptide_deriver:dump_peptide_pose")
 
BooleanOptionKey const peptide_deriver::dump_cyclic_poses ("peptide_deriver:dump_cyclic_poses")
 
BooleanOptionKey const peptide_deriver::dump_prepared_pose ("peptide_deriver:dump_prepared_pose")
 
BooleanOptionKey const peptide_deriver::dump_report_file ("peptide_deriver:dump_report_file")
 
StringVectorOptionKey const peptide_deriver::restrict_receptors_to_chains ("peptide_deriver:restrict_receptors_to_chains")
 
StringVectorOptionKey const peptide_deriver::restrict_partners_to_chains ("peptide_deriver:restrict_partners_to_chains")
 
BooleanOptionKey const peptide_deriver::do_minimize ("peptide_deriver:do_minimize")
 
RealOptionKey const peptide_deriver::optimize_cyclic_threshold ("peptide_deriver:optimize_cyclic_threshold")
 
StringOptionKey const peptide_deriver::report_format ("peptide_deriver:report_format")
 
BooleanOptionKey const peptide_deriver::report_gzip ("peptide_deriver:report_gzip")
 
BooleanOptionKey const phil::phil ("phil")
 
IntegerOptionKey const phil::nloop ("phil:nloop")
 
StringOptionKey const phil::vall_file ("phil:vall_file")
 
BooleanOptionKey const ralford::ralford ("ralford")
 
BooleanOptionKey const ralford::dump_rotamers::dump_rotamers ("ralford:dump_rotamers")
 
IntegerOptionKey const ralford::dump_rotamers::rsd_index ("ralford:dump_rotamers:rsd_index")
 
StringOptionKey const ralford::dump_rotamers::rotamer_info_prefix ("ralford:dump_rotamers:rotamer_info_prefix")
 
BooleanOptionKey const ralford::dump_rotamers::write_rotamers_to_pdbs ("ralford:dump_rotamers:write_rotamers_to_pdbs")
 
BooleanOptionKey const ralford::dump_rotamers::all_positions ("ralford:dump_rotamers:all_positions")
 
BooleanOptionKey const robert::robert ("robert")
 
StringOptionKey const robert::pairdata_input_pdb_list ("robert:pairdata_input_pdb_list")
 
RealOptionKey const robert::pcs_maxsub_filter ("robert:pcs_maxsub_filter")
 
RealOptionKey const robert::pcs_maxsub_rmsd ("robert:pcs_maxsub_rmsd")
 
BooleanOptionKey const robert::pcs_dump_cluster ("robert:pcs_dump_cluster")
 
RealOptionKey const robert::pcs_cluster_coverage ("robert:pcs_cluster_coverage")
 
BooleanOptionKey const robert::pcs_cluster_lowscoring ("robert:pcs_cluster_lowscoring")
 
BooleanOptionKey const rot_anl::rot_anl ("rot_anl")
 
StringOptionKey const rot_anl::tag ("rot_anl:tag")
 
BooleanOptionKey const rot_anl::min ("rot_anl:min")
 
BooleanOptionKey const rot_anl::repack ("rot_anl:repack")
 
BooleanOptionKey const rot_anl::rtmin ("rot_anl:rtmin")
 
BooleanOptionKey const rot_anl::scmove ("rot_anl:scmove")
 
BooleanOptionKey const rot_anl::design ("rot_anl:design")
 
BooleanOptionKey const rot_anl::dump_pdb ("rot_anl:dump_pdb")
 
IntegerOptionKey const rot_anl::nloop_scmove ("rot_anl:nloop_scmove")
 
BooleanOptionKey const smhybrid::smhybrid ("smhybrid")
 
BooleanOptionKey const smhybrid::add_cavities ("smhybrid:add_cavities")
 
BooleanOptionKey const smhybrid::abinitio_design ("smhybrid:abinitio_design")
 
BooleanOptionKey const smhybrid::fa_refine ("smhybrid:fa_refine")
 
BooleanOptionKey const smhybrid::virtual_nterm ("smhybrid:virtual_nterm")
 
BooleanOptionKey const smhybrid::debug ("smhybrid:debug")
 
BooleanOptionKey const smhybrid::refine ("smhybrid:refine")
 
BooleanOptionKey const smhybrid::centroid_all_val ("smhybrid:centroid_all_val")
 
BooleanOptionKey const smhybrid::subsubs_attract ("smhybrid:subsubs_attract")
 
BooleanOptionKey const smhybrid::linker_cst ("smhybrid:linker_cst")
 
BooleanOptionKey const smhybrid::pseudosym ("smhybrid:pseudosym")
 
BooleanOptionKey const smhybrid::design_linker ("smhybrid:design_linker")
 
BooleanOptionKey const smhybrid::design ("smhybrid:design")
 
BooleanOptionKey const smhybrid::restrict_design_to_interface ("smhybrid:restrict_design_to_interface")
 
BooleanOptionKey const smhybrid::restrict_design_to_subsub_interface ("smhybrid:restrict_design_to_subsub_interface")
 
BooleanOptionKey const smhybrid::design_hydrophobic ("smhybrid:design_hydrophobic")
 
BooleanOptionKey const smhybrid::add_metal_at_0 ("smhybrid:add_metal_at_0")
 
IntegerOptionKey const smhybrid::nres_mono ("smhybrid:nres_mono")
 
IntegerOptionKey const smhybrid::abinitio_cycles ("smhybrid:abinitio_cycles")
 
IntegerOptionKey const smhybrid::primary_subsubunit ("smhybrid:primary_subsubunit")
 
IntegerOptionKey const smhybrid::minbb ("smhybrid:minbb")
 
IntegerOptionKey const smhybrid::switch_concert_sub ("smhybrid:switch_concert_sub")
 
RealOptionKey const smhybrid::temperature ("smhybrid:temperature")
 
BooleanOptionKey const smhybrid::inter_subsub_cst ("smhybrid:inter_subsub_cst")
 
RealOptionKey const smhybrid::rb_mag ("smhybrid:rb_mag")
 
FileOptionKey const smhybrid::symm_def_template ("smhybrid:symm_def_template")
 
FileOptionKey const smhybrid::symm_def_template_reduced ("smhybrid:symm_def_template_reduced")
 
IntegerVectorOptionKey const smhybrid::attach_as_sc ("smhybrid:attach_as_sc")
 
IntegerVectorOptionKey const smhybrid::attach_as_sc_sub ("smhybrid:attach_as_sc_sub")
 
BooleanVectorOptionKey const smhybrid::chainbreaks ("smhybrid:chainbreaks")
 
StringVectorOptionKey const smhybrid::design_res_files ("smhybrid:design_res_files")
 
StringVectorOptionKey const smhybrid::fixed_res_files ("smhybrid:fixed_res_files")
 
StringVectorOptionKey const smhybrid::frag_res_files ("smhybrid:frag_res_files")
 
StringVectorOptionKey const smhybrid::scattach_res_files ("smhybrid:scattach_res_files")
 
StringVectorOptionKey const smhybrid::rep_edge_files ("smhybrid:rep_edge_files")
 
StringVectorOptionKey const smhybrid::virtual_res_files ("smhybrid:virtual_res_files")
 
StringVectorOptionKey const smhybrid::jumpcut_files ("smhybrid:jumpcut_files")
 
StringVectorOptionKey const smhybrid::cst_sub_files ("smhybrid:cst_sub_files")
 
StringVectorOptionKey const smhybrid::symm_file_tag ("smhybrid:symm_file_tag")
 
StringVectorOptionKey const smhybrid::attach_atom ("smhybrid:attach_atom")
 
StringVectorOptionKey const smhybrid::add_res_before ("smhybrid:add_res_before")
 
StringVectorOptionKey const smhybrid::add_res_after ("smhybrid:add_res_after")
 
StringVectorOptionKey const smhybrid::add_ss_before ("smhybrid:add_ss_before")
 
StringVectorOptionKey const smhybrid::add_ss_after ("smhybrid:add_ss_after")
 
StringVectorOptionKey const smhybrid::add_atom_at_cen ("smhybrid:add_atom_at_cen")
 
StringVectorOptionKey const smhybrid::attach_rsd ("smhybrid:attach_rsd")
 
BooleanOptionKey const tcrmodel::tcrmodel ("tcrmodel")
 
FileOptionKey const tcrmodel::ignore_list ("tcrmodel:ignore_list")
 
RealOptionKey const tcrmodel::blastp_identity_cutoff ("tcrmodel:blastp_identity_cutoff")
 
RealOptionKey const tcrmodel::template_identity_cutoff ("tcrmodel:template_identity_cutoff")
 
BooleanOptionKey const tcrmodel::include_ab_templates ("tcrmodel:include_ab_templates")
 
BooleanOptionKey const tcrmodel::dump_templates ("tcrmodel:dump_templates")
 
BooleanOptionKey const tcrmodel::skip_modeling ("tcrmodel:skip_modeling")
 
StringOptionKey const tcrmodel::ab_template_db_path ("tcrmodel:ab_template_db_path")
 
StringOptionKey const tcrmodel::tcr_template_db_path ("tcrmodel:tcr_template_db_path")
 
BooleanOptionKey const tcrmodel::minimize_model ("tcrmodel:minimize_model")
 
BooleanOptionKey const tcrmodel::relax_model ("tcrmodel:relax_model")
 
BooleanOptionKey const tcrmodel::remodel_loop_cdr3a ("tcrmodel:remodel_loop_cdr3a")
 
BooleanOptionKey const tcrmodel::remodel_loop_cdr3b ("tcrmodel:remodel_loop_cdr3b")
 
BooleanOptionKey const tcrmodel::remodel_tcr_cdr3a_loop ("tcrmodel:remodel_tcr_cdr3a_loop")
 
BooleanOptionKey const tcrmodel::remodel_tcr_cdr3b_loop ("tcrmodel:remodel_tcr_cdr3b_loop")
 
BooleanOptionKey const tcrmodel::refine_tcr_cdr3a_loop ("tcrmodel:refine_tcr_cdr3a_loop")
 
BooleanOptionKey const tcrmodel::refine_tcr_cdr3b_loop ("tcrmodel:refine_tcr_cdr3b_loop")
 
BooleanOptionKey const tcrmodel::remodel_tcr_cdr3_loops ("tcrmodel:remodel_tcr_cdr3_loops")
 
BooleanOptionKey const tcrmodel::refine_tcr_cdr3_loops ("tcrmodel:refine_tcr_cdr3_loops")
 
BooleanOptionKey const tcrmodel::refine_all_tcr_cdr_loops ("tcrmodel:refine_all_tcr_cdr_loops")
 
BooleanOptionKey const tcrmodel::use_user_templates ("tcrmodel:use_user_templates")
 
StringOptionKey const tcrmodel::alpha_framework_template_id ("tcrmodel:alpha_framework_template_id")
 
StringOptionKey const tcrmodel::beta_framework_template_id ("tcrmodel:beta_framework_template_id")
 
StringOptionKey const tcrmodel::alpha_germline_template_id ("tcrmodel:alpha_germline_template_id")
 
StringOptionKey const tcrmodel::beta_germline_template_id ("tcrmodel:beta_germline_template_id")
 
StringOptionKey const tcrmodel::alpha_cdr1_template_id ("tcrmodel:alpha_cdr1_template_id")
 
StringOptionKey const tcrmodel::beta_cdr1_template_id ("tcrmodel:beta_cdr1_template_id")
 
StringOptionKey const tcrmodel::alpha_cdr2_template_id ("tcrmodel:alpha_cdr2_template_id")
 
StringOptionKey const tcrmodel::beta_cdr2_template_id ("tcrmodel:beta_cdr2_template_id")
 
StringOptionKey const tcrmodel::alpha_cdr3_template_id ("tcrmodel:alpha_cdr3_template_id")
 
StringOptionKey const tcrmodel::beta_cdr3_template_id ("tcrmodel:beta_cdr3_template_id")
 
StringOptionKey const tcrmodel::alpha_orientation_template_id ("tcrmodel:alpha_orientation_template_id")
 
StringOptionKey const tcrmodel::beta_orientation_template_id ("tcrmodel:beta_orientation_template_id")
 
StringOptionKey const tcrmodel::alpha_framework_template_pdb ("tcrmodel:alpha_framework_template_pdb")
 
StringOptionKey const tcrmodel::beta_framework_template_pdb ("tcrmodel:beta_framework_template_pdb")
 
StringOptionKey const tcrmodel::alpha_germline_template_pdb ("tcrmodel:alpha_germline_template_pdb")
 
StringOptionKey const tcrmodel::beta_germline_template_pdb ("tcrmodel:beta_germline_template_pdb")
 
StringOptionKey const tcrmodel::alpha_cdr1_template_pdb ("tcrmodel:alpha_cdr1_template_pdb")
 
StringOptionKey const tcrmodel::beta_cdr1_template_pdb ("tcrmodel:beta_cdr1_template_pdb")
 
StringOptionKey const tcrmodel::alpha_cdr2_template_pdb ("tcrmodel:alpha_cdr2_template_pdb")
 
StringOptionKey const tcrmodel::beta_cdr2_template_pdb ("tcrmodel:beta_cdr2_template_pdb")
 
StringOptionKey const tcrmodel::alpha_cdr3_template_pdb ("tcrmodel:alpha_cdr3_template_pdb")
 
StringOptionKey const tcrmodel::beta_cdr3_template_pdb ("tcrmodel:beta_cdr3_template_pdb")
 
StringOptionKey const tcrmodel::alpha_orientation_template_pdb ("tcrmodel:alpha_orientation_template_pdb")
 
StringOptionKey const tcrmodel::beta_orientation_template_pdb ("tcrmodel:beta_orientation_template_pdb")
 
BooleanOptionKey const tcrmodel::use_alpha_germline_templates ("tcrmodel:use_alpha_germline_templates")
 
BooleanOptionKey const tcrmodel::use_beta_germline_templates ("tcrmodel:use_beta_germline_templates")
 
BooleanOptionKey const tcrmodel::assign_cdr ("tcrmodel:assign_cdr")
 
StringOptionKey const tcrmodel::assign_cdr1a ("tcrmodel:assign_cdr1a")
 
StringOptionKey const tcrmodel::assign_cdr2a ("tcrmodel:assign_cdr2a")
 
StringOptionKey const tcrmodel::assign_cdr3a ("tcrmodel:assign_cdr3a")
 
StringOptionKey const tcrmodel::assign_cdr1b ("tcrmodel:assign_cdr1b")
 
StringOptionKey const tcrmodel::assign_cdr2b ("tcrmodel:assign_cdr2b")
 
StringOptionKey const tcrmodel::assign_cdr3b ("tcrmodel:assign_cdr3b")
 
StringOptionKey const tcrmodel::anarci_path ("tcrmodel:anarci_path")
 
BooleanOptionKey const threadsc::threadsc ("threadsc")
 
StringOptionKey const threadsc::src_chain ("threadsc:src_chain")
 
StringOptionKey const threadsc::trg_chain ("threadsc:trg_chain")
 
IntegerOptionKey const threadsc::src_first_resid ("threadsc:src_first_resid")
 
IntegerOptionKey const threadsc::trg_first_resid ("threadsc:trg_first_resid")
 
IntegerOptionKey const threadsc::nres ("threadsc:nres")
 
IntegerOptionKey const threadsc::trg_anchor ("threadsc:trg_anchor")
 
BooleanOptionKey const ufv::ufv ("ufv")
 
IntegerOptionKey const ufv::left ("ufv:left")
 
IntegerOptionKey const ufv::right ("ufv:right")
 
StringOptionKey const ufv::ss ("ufv:ss")
 
StringOptionKey const ufv::aa_during_build ("ufv:aa_during_build")
 
StringOptionKey const ufv::aa_during_design_refine ("ufv:aa_during_design_refine")
 
BooleanOptionKey const ufv::keep_junction_torsions ("ufv:keep_junction_torsions")
 
FileOptionKey const ufv::ufv_loops ("ufv:ufv_loops")
 
BooleanOptionKey const ufv::use_fullmer ("ufv:use_fullmer")
 
StringOptionKey const ufv::centroid_loop_mover ("ufv:centroid_loop_mover")
 
BooleanOptionKey const ufv::no_neighborhood_design ("ufv:no_neighborhood_design")
 
IntegerOptionKey const ufv::dr_cycles ("ufv:dr_cycles")
 
StringOptionKey const ufv::centroid_sfx ("ufv:centroid_sfx")
 
StringOptionKey const ufv::centroid_sfx_patch ("ufv:centroid_sfx_patch")
 
StringOptionKey const ufv::fullatom_sfx ("ufv:fullatom_sfx")
 
StringOptionKey const ufv::fullatom_sfx_patch ("ufv:fullatom_sfx_patch")
 
BooleanOptionKey const ufv::insert::insert ("ufv:insert")
 
FileOptionKey const ufv::insert::insert_pdb ("ufv:insert:insert_pdb")
 
FileOptionKey const ufv::insert::attached_pdb ("ufv:insert:attached_pdb")
 
StringOptionKey const ufv::insert::connection_scheme ("ufv:insert:connection_scheme")
 
BooleanOptionKey const willmatch::willmatch ("willmatch")
 
StringVectorOptionKey const willmatch::write_reduced_matchset ("willmatch:write_reduced_matchset")
 
RealOptionKey const willmatch::interface_size ("willmatch:interface_size")
 
RealOptionKey const willmatch::max_dis_any ("willmatch:max_dis_any")
 
RealOptionKey const willmatch::max_dis_all ("willmatch:max_dis_all")
 
RealOptionKey const willmatch::max_dis_hb ("willmatch:max_dis_hb")
 
RealOptionKey const willmatch::min_dis_hb ("willmatch:min_dis_hb")
 
RealOptionKey const willmatch::max_dis_hb_colinear ("willmatch:max_dis_hb_colinear")
 
RealOptionKey const willmatch::max_dis_metal ("willmatch:max_dis_metal")
 
RealOptionKey const willmatch::max_ang_metal ("willmatch:max_ang_metal")
 
RealOptionKey const willmatch::clash_dis ("willmatch:clash_dis")
 
RealOptionKey const willmatch::c2_linker_dist ("willmatch:c2_linker_dist")
 
RealOptionKey const willmatch::identical_match_dis ("willmatch:identical_match_dis")
 
RealOptionKey const willmatch::chi1_increment ("willmatch:chi1_increment")
 
RealOptionKey const willmatch::chi2_increment ("willmatch:chi2_increment")
 
RealOptionKey const willmatch::c2_symm_increment ("willmatch:c2_symm_increment")
 
RealOptionKey const willmatch::cb_sasa_thresh ("willmatch:cb_sasa_thresh")
 
BooleanOptionKey const willmatch::design_interface ("willmatch:design_interface")
 
FileOptionKey const willmatch::chilist ("willmatch:chilist")
 
FileOptionKey const willmatch::fixed_res ("willmatch:fixed_res")
 
FileOptionKey const willmatch::native1 ("willmatch:native1")
 
FileOptionKey const willmatch::native2 ("willmatch:native2")
 
FileOptionKey const willmatch::exclude_res1 ("willmatch:exclude_res1")
 
FileOptionKey const willmatch::exclude_res2 ("willmatch:exclude_res2")
 
FileOptionKey const willmatch::taglist ("willmatch:taglist")
 
IntegerVectorOptionKey const willmatch::residues ("willmatch:residues")
 
BooleanOptionKey const willmatch::symmetry_d2 ("willmatch:symmetry_d2")
 
BooleanOptionKey const willmatch::symmetry_c2_dock ("willmatch:symmetry_c2_dock")
 
IntegerVectorOptionKey const willmatch::splitwork ("willmatch:splitwork")
 
BooleanOptionKey const willmatch::exclude_ala ("willmatch:exclude_ala")
 
RealOptionKey const willmatch::match_overlap_dis ("willmatch:match_overlap_dis")
 
RealOptionKey const willmatch::match_overlap_ang ("willmatch:match_overlap_ang")
 
IntegerVectorOptionKey const willmatch::forbid_residues ("willmatch:forbid_residues")
 
RealVectorOptionKey const willmatch::poi ("willmatch:poi")
 
RealOptionKey const willmatch::poidis ("willmatch:poidis")
 
BooleanOptionKey const willmatch::homodimer ("willmatch:homodimer")
 
RealOptionKey const willmatch::fa_dun_thresh ("willmatch:fa_dun_thresh")
 
BooleanOptionKey const PDB_diagnostic::PDB_diagnostic ("PDB_diagnostic")
 
BooleanOptionKey const PDB_diagnostic::reading_only ("PDB_diagnostic:reading_only")
 
BooleanOptionKey const PDB_diagnostic::skip_pack_and_min ("PDB_diagnostic:skip_pack_and_min")
 
BooleanOptionKey const testing::testing ("testing")
 
BooleanOptionKey const testing::HCF ("testing:HCF")
 
BooleanOptionKey const testing::INTEGRATION_TEST ("testing:INTEGRATION_TEST")