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homodimer_design.cc File Reference

Symmetric homodimer design. More...

#include <devel/init.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/metrics/CalculatorFactory.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/constraints/ResidueTypeConstraint.hh>
#include <core/scoring/ScoreType.hh>
#include <basic/MetricValue.hh>
#include <basic/datacache/CacheableData.hh>
#include <basic/Tracer.hh>
#include <protocols/moves/Mover.hh>
#include <core/pose/metrics/simple_calculators/InterfaceNeighborDefinitionCalculator.hh>
#include <protocols/task_operations/RestrictToInterfaceOperation.hh>
#include <protocols/protein_interface_design/movers/BuildAlaPose.hh>
#include <protocols/protein_interface_design/movers/SaveAndRetrieveSidechains.hh>
#include <protocols/simple_ddg/ddG.hh>
#include <protocols/symmetric_docking/SymDockProtocol.hh>
#include <protocols/symmetry/SetupForSymmetryMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <basic/options/keys/enzdes.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <sstream>
#include <iostream>
#include <string>
#include <utility/vector0.hh>
#include <utility/excn/Exceptions.hh>

Classes

class  HDdesignMover
 

Enumerations

enum  Index {
  chain_index = 1, start_index = 2, end_index = 3, max_neighbors = 16,
  trans = 1, rot = 2
}
 

Functions

int main (int argc, char *argv[])
 

Variables

static basic::Tracer TR ("apps.public.beta_strand_homodimer_design.homodimer_design")
 
basic::options::BooleanOptionKey
const 
make_ala_interface ("make_ala_interface")
 
basic::options::IntegerOptionKey
const 
pack_min_runs ("pack_min_runs")
 
basic::options::BooleanOptionKey
const 
find_bb_hbond_E ("find_bb_hbond_E")
 
basic::options::BooleanOptionKey
const 
skip_hd_docking ("skip_hd_docking")
 
basic::options::StringOptionKey
const 
disallow_res ("disallow_res")
 

Detailed Description

Symmetric homodimer design.

Enumeration Type Documentation

enum Index
Enumerator
chain_index 
start_index 
end_index 
max_neighbors 
trans 
rot 

Function Documentation

int main ( int  argc,
char *  argv[] 
)

Variable Documentation

basic::options::StringOptionKey const disallow_res("disallow_res")
basic::options::BooleanOptionKey const find_bb_hbond_E("find_bb_hbond_E")
basic::options::BooleanOptionKey const make_ala_interface("make_ala_interface")
basic::options::IntegerOptionKey const pack_min_runs("pack_min_runs")
basic::options::BooleanOptionKey const skip_hd_docking("skip_hd_docking")
basic::Tracer TR("apps.public.beta_strand_homodimer_design.homodimer_design")
static