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Rosetta
2020.50
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Namespaces | |
PyMOLMover | |
BooleanOptionKey const basic::options::OptionKeys::run::archive |
Referenced by add_rosetta_options_1().
FileVectorOptionKey const basic::options::OptionKeys::run::batches |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::benchmark |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::run::chain |
Referenced by add_rosetta_options_1(), AnchorFinderMover::apply(), HDmakerMover::apply(), supercharge::apply(), demo.D050_Packer_task::generate_resfile_from_pose(), utility::get_resnum_and_chain_and_segid(), utility::get_resnum_and_chain_from_one_tag(), identify_targeted_positions(), main(), apps::public1::scenarios::chemically_conjugated_docking::pack_extra_bodies(), process_pose(), APDBCMover::read_in_insert_loop_info(), spanfile_for_each_chain(), and GlycanClashCheckMover::tabulate_individual_data().
BooleanOptionKey const basic::options::OptionKeys::run::checkpoint |
Referenced by add_rosetta_options_1(), and main().
IntegerOptionKey const basic::options::OptionKeys::run::checkpoint_interval |
Referenced by add_rosetta_options_1(), and main().
BooleanOptionKey const basic::options::OptionKeys::run::condor |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::constant_seed |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::crash_to_console |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::cycles_inner |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::cycles_outer |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::debug |
Referenced by add_rosetta_options_1(), and main().
BooleanOptionKey const basic::options::OptionKeys::run::decoystats |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::delay |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::delete_checkpoints |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::dry_run |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::exit_if_missing_heavy_atoms |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::idealize_before_protocol |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::ignore_zero_occupancy |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::interactive |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::intermediate_scorefiles |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::intermediate_structures |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::run::jobdist_miscfile_ext |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::jran |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::keep_pymol_simulation_history |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::max_min_iter |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::max_retry_job |
Referenced by add_rosetta_options_1(), check_option_conflicts(), and fill_required_options().
IntegerOptionKey const basic::options::OptionKeys::run::maxruntime |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::run::maxruntime_bufferfactor |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::memory_test_cycles |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::run::min_tolerance |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::run::min_type |
Referenced by add_rosetta_options_1(), UBQ_GTPase_disulfide_Mover::apply(), UBQ_E2Mover::apply(), and main().
BooleanOptionKey const basic::options::OptionKeys::run::multiple_processes_writing_to_one_directory |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::n_cycles |
IntegerOptionKey const basic::options::OptionKeys::run::n_replica |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::nblist_autoupdate |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_narrow |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_wide |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::no_prof_info_in_silentout |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::no_scorefile |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::nodelay |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::nosignal |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::nproc |
Referenced by add_rosetta_options_1(), and erraser2_test().
FileOptionKey const basic::options::OptionKeys::run::other_pose_scorefile |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::other_pose_to_scorefile |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::output_hbond_info |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::preserve_header |
Referenced by add_rosetta_options_1(), main(), and match_main().
IntegerOptionKey const basic::options::OptionKeys::run::proc_id |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::profile |
StringOptionKey const basic::options::OptionKeys::run::protocol |
Referenced by add_rosetta_options_1(), and main().
IntegerOptionKey const basic::options::OptionKeys::run::random_delay |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::randomize_missing_coords |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::rebuild_disulf |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_each_job |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_new_input |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::remove_ss_length_screen |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::repack_rate |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::repeat |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::run::rng |
Referenced by add_rosetta_options_1().
StringOptionKey const basic::options::OptionKeys::run::rng_seed_device |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::run |
Referenced by add_rosetta_options_1(), PerformanceBenchmark::execute(), and main().
BooleanOptionKey const basic::options::OptionKeys::run::score_only |
Referenced by add_rosetta_options_1().
IntegerOptionKey const basic::options::OptionKeys::run::seed_offset |
Referenced by add_rosetta_options_1().
RealOptionKey const basic::options::OptionKeys::run::show_simulation_in_pymol |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::shuffle |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::skip_set_reasonable_fold_tree |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::suppress_checkpoints |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::test_cycles |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::timer |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::update_pymol_on_conformation_changes_only |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::update_pymol_on_energy_changes_only |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::use_time_as_seed |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::version |
Referenced by add_rosetta_options_1(), apps::pilot::frankdt::main(), and utility::save_crash_report_to_file().
RealOptionKey const basic::options::OptionKeys::run::wide_nblist_extension |
Referenced by add_rosetta_options_1().
BooleanOptionKey const basic::options::OptionKeys::run::write_failures |
Referenced by add_rosetta_options_1().