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basic::options::OptionKeys::run Namespace Reference

Namespaces

 PyMOLMover
 

Variables

BooleanOptionKey const run
 
FileVectorOptionKey const batches
 
BooleanOptionKey const no_prof_info_in_silentout
 
BooleanOptionKey const archive
 
IntegerOptionKey const n_replica
 
BooleanOptionKey const shuffle
 
IntegerOptionKey const n_cycles
 
IntegerOptionKey const repeat
 
IntegerOptionKey const max_min_iter
 
IntegerOptionKey const maxruntime
 
RealOptionKey const maxruntime_bufferfactor
 
BooleanOptionKey const write_failures
 
BooleanOptionKey const benchmark
 
BooleanOptionKey const test_cycles
 
BooleanOptionKey const memory_test_cycles
 
BooleanOptionKey const dry_run
 
BooleanOptionKey const debug
 
BooleanOptionKey const profile
 
IntegerOptionKey const max_retry_job
 
BooleanOptionKey const version
 
BooleanOptionKey const nodelay
 
IntegerOptionKey const delay
 
IntegerOptionKey const random_delay
 
BooleanOptionKey const timer
 
StringOptionKey const chain
 
BooleanOptionKey const score_only
 
BooleanOptionKey const decoystats
 
BooleanOptionKey const output_hbond_info
 
RealOptionKey const wide_nblist_extension
 
BooleanOptionKey const constant_seed
 
IntegerOptionKey const jran
 
BooleanOptionKey const use_time_as_seed
 
StringOptionKey const rng_seed_device
 
IntegerOptionKey const seed_offset
 
StringOptionKey const rng
 
BooleanOptionKey const rebuild_disulf
 
BooleanOptionKey const preserve_header
 
BooleanOptionKey const suppress_checkpoints
 
BooleanOptionKey const checkpoint
 
BooleanOptionKey const delete_checkpoints
 
IntegerOptionKey const checkpoint_interval
 
StringOptionKey const protocol
 
BooleanOptionKey const remove_ss_length_screen
 
StringOptionKey const min_type
 
RealOptionKey const min_tolerance
 
BooleanOptionKey const nblist_autoupdate
 
RealOptionKey const nblist_autoupdate_narrow
 
RealOptionKey const nblist_autoupdate_wide
 
BooleanOptionKey const skip_set_reasonable_fold_tree
 
BooleanOptionKey const randomize_missing_coords
 
BooleanOptionKey const ignore_zero_occupancy
 
IntegerOptionKey const cycles_outer
 
IntegerOptionKey const cycles_inner
 
IntegerOptionKey const repack_rate
 
BooleanOptionKey const reinitialize_mover_for_each_job
 
BooleanOptionKey const reinitialize_mover_for_new_input
 
BooleanOptionKey const multiple_processes_writing_to_one_directory
 
StringOptionKey const jobdist_miscfile_ext
 
BooleanOptionKey const no_scorefile
 
BooleanOptionKey const other_pose_to_scorefile
 
FileOptionKey const other_pose_scorefile
 
BooleanOptionKey const intermediate_scorefiles
 
BooleanOptionKey const intermediate_structures
 
BooleanOptionKey const idealize_before_protocol
 
BooleanOptionKey const interactive
 
BooleanOptionKey const nosignal
 
BooleanOptionKey const crash_to_console
 
BooleanOptionKey const condor
 
IntegerOptionKey const nproc
 
IntegerOptionKey const proc_id
 
BooleanOptionKey const exit_if_missing_heavy_atoms
 
RealOptionKey const show_simulation_in_pymol
 
BooleanOptionKey const update_pymol_on_energy_changes_only
 
BooleanOptionKey const update_pymol_on_conformation_changes_only
 
BooleanOptionKey const keep_pymol_simulation_history
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::run::archive

Referenced by add_rosetta_options_1().

FileVectorOptionKey const basic::options::OptionKeys::run::batches

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::benchmark

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::chain
BooleanOptionKey const basic::options::OptionKeys::run::checkpoint

Referenced by add_rosetta_options_1(), and main().

IntegerOptionKey const basic::options::OptionKeys::run::checkpoint_interval

Referenced by add_rosetta_options_1(), and main().

BooleanOptionKey const basic::options::OptionKeys::run::condor

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::constant_seed

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::crash_to_console

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::cycles_inner

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::cycles_outer

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::debug

Referenced by add_rosetta_options_1(), and main().

BooleanOptionKey const basic::options::OptionKeys::run::decoystats

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::delay

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::delete_checkpoints

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::dry_run

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::exit_if_missing_heavy_atoms

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::idealize_before_protocol

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::ignore_zero_occupancy

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::interactive

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::intermediate_scorefiles

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::intermediate_structures

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::jobdist_miscfile_ext

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::jran

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::keep_pymol_simulation_history

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::max_min_iter

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::max_retry_job
IntegerOptionKey const basic::options::OptionKeys::run::maxruntime

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::maxruntime_bufferfactor

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::memory_test_cycles

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::min_tolerance

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::min_type
BooleanOptionKey const basic::options::OptionKeys::run::multiple_processes_writing_to_one_directory

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::n_cycles
IntegerOptionKey const basic::options::OptionKeys::run::n_replica

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::nblist_autoupdate

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_narrow

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_wide

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::no_prof_info_in_silentout

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::no_scorefile

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::nodelay

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::nosignal

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::nproc
FileOptionKey const basic::options::OptionKeys::run::other_pose_scorefile

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::other_pose_to_scorefile

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::output_hbond_info

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::preserve_header
IntegerOptionKey const basic::options::OptionKeys::run::proc_id

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::profile
StringOptionKey const basic::options::OptionKeys::run::protocol

Referenced by add_rosetta_options_1(), and main().

IntegerOptionKey const basic::options::OptionKeys::run::random_delay

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::randomize_missing_coords

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::rebuild_disulf

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_each_job

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_new_input

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::remove_ss_length_screen

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::repack_rate

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::repeat

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::rng

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::rng_seed_device

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::run
BooleanOptionKey const basic::options::OptionKeys::run::score_only

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::seed_offset

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::show_simulation_in_pymol

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::shuffle

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::skip_set_reasonable_fold_tree

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::suppress_checkpoints

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::test_cycles

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::timer

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::update_pymol_on_conformation_changes_only

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::update_pymol_on_energy_changes_only

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::use_time_as_seed

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::version
RealOptionKey const basic::options::OptionKeys::run::wide_nblist_extension

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::write_failures

Referenced by add_rosetta_options_1().