basic::options::OptionKeys::run Namespace Reference

Namespaces
	PyMOLMover

Variables
BooleanOptionKey const	run
FileVectorOptionKey const	batches
BooleanOptionKey const	no_prof_info_in_silentout
BooleanOptionKey const	archive
IntegerOptionKey const	n_replica
BooleanOptionKey const	shuffle
IntegerOptionKey const	n_cycles
IntegerOptionKey const	repeat
IntegerOptionKey const	max_min_iter
IntegerOptionKey const	maxruntime
RealOptionKey const	maxruntime_bufferfactor
BooleanOptionKey const	write_failures
BooleanOptionKey const	benchmark
BooleanOptionKey const	test_cycles
BooleanOptionKey const	memory_test_cycles
BooleanOptionKey const	dry_run
BooleanOptionKey const	debug
BooleanOptionKey const	profile
IntegerOptionKey const	max_retry_job
BooleanOptionKey const	version
BooleanOptionKey const	nodelay
IntegerOptionKey const	delay
IntegerOptionKey const	random_delay
BooleanOptionKey const	timer
StringOptionKey const	chain
BooleanOptionKey const	score_only
BooleanOptionKey const	decoystats
BooleanOptionKey const	output_hbond_info
RealOptionKey const	wide_nblist_extension
BooleanOptionKey const	constant_seed
IntegerOptionKey const	jran
BooleanOptionKey const	use_time_as_seed
StringOptionKey const	rng_seed_device
IntegerOptionKey const	seed_offset
StringOptionKey const	rng
BooleanOptionKey const	rebuild_disulf
BooleanOptionKey const	preserve_header
BooleanOptionKey const	suppress_checkpoints
BooleanOptionKey const	checkpoint
BooleanOptionKey const	delete_checkpoints
IntegerOptionKey const	checkpoint_interval
StringOptionKey const	protocol
BooleanOptionKey const	remove_ss_length_screen
StringOptionKey const	min_type
RealOptionKey const	min_tolerance
BooleanOptionKey const	nblist_autoupdate
RealOptionKey const	nblist_autoupdate_narrow
RealOptionKey const	nblist_autoupdate_wide
BooleanOptionKey const	skip_set_reasonable_fold_tree
BooleanOptionKey const	randomize_missing_coords
BooleanOptionKey const	ignore_zero_occupancy
IntegerOptionKey const	cycles_outer
IntegerOptionKey const	cycles_inner
IntegerOptionKey const	repack_rate
BooleanOptionKey const	reinitialize_mover_for_each_job
BooleanOptionKey const	reinitialize_mover_for_new_input
BooleanOptionKey const	multiple_processes_writing_to_one_directory
StringOptionKey const	jobdist_miscfile_ext
BooleanOptionKey const	no_scorefile
BooleanOptionKey const	other_pose_to_scorefile
FileOptionKey const	other_pose_scorefile
BooleanOptionKey const	intermediate_scorefiles
BooleanOptionKey const	intermediate_structures
BooleanOptionKey const	idealize_before_protocol
BooleanOptionKey const	interactive
BooleanOptionKey const	nosignal
BooleanOptionKey const	crash_to_console
BooleanOptionKey const	condor
IntegerOptionKey const	nproc
IntegerOptionKey const	proc_id
BooleanOptionKey const	exit_if_missing_heavy_atoms
RealOptionKey const	show_simulation_in_pymol
BooleanOptionKey const	update_pymol_on_energy_changes_only
BooleanOptionKey const	update_pymol_on_conformation_changes_only
BooleanOptionKey const	keep_pymol_simulation_history

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::run::archive

Referenced by add_rosetta_options_1().

FileVectorOptionKey const basic::options::OptionKeys::run::batches

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::benchmark

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::chain

Referenced by add_rosetta_options_1(), AnchorFinderMover::apply(), HDmakerMover::apply(), supercharge::apply(), demo.D050_Packer_task::generate_resfile_from_pose(), utility::get_resnum_and_chain_and_segid(), utility::get_resnum_and_chain_from_one_tag(), identify_targeted_positions(), main(), apps::public1::scenarios::chemically_conjugated_docking::pack_extra_bodies(), process_pose(), APDBCMover::read_in_insert_loop_info(), spanfile_for_each_chain(), and GlycanClashCheckMover::tabulate_individual_data().

BooleanOptionKey const basic::options::OptionKeys::run::checkpoint

Referenced by add_rosetta_options_1(), and main().

IntegerOptionKey const basic::options::OptionKeys::run::checkpoint_interval

Referenced by add_rosetta_options_1(), and main().

BooleanOptionKey const basic::options::OptionKeys::run::condor

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::constant_seed

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::crash_to_console

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::cycles_inner

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::cycles_outer

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::debug

Referenced by add_rosetta_options_1(), and main().

BooleanOptionKey const basic::options::OptionKeys::run::decoystats

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::delay

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::delete_checkpoints

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::dry_run

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::exit_if_missing_heavy_atoms

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::idealize_before_protocol

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::ignore_zero_occupancy

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::interactive

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::intermediate_scorefiles

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::intermediate_structures

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::jobdist_miscfile_ext

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::jran

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::keep_pymol_simulation_history

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::max_min_iter

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::max_retry_job

Referenced by add_rosetta_options_1(), check_option_conflicts(), and fill_required_options().

IntegerOptionKey const basic::options::OptionKeys::run::maxruntime

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::maxruntime_bufferfactor

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::memory_test_cycles

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::min_tolerance

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::min_type

Referenced by add_rosetta_options_1(), UBQ_GTPase_disulfide_Mover::apply(), UBQ_E2Mover::apply(), and main().

BooleanOptionKey const basic::options::OptionKeys::run::multiple_processes_writing_to_one_directory

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::n_cycles

Referenced by add_rosetta_options_1(), DockGlycansProtocol::register_options(), and DockGlycansProtocol::set_commandline_options().

IntegerOptionKey const basic::options::OptionKeys::run::n_replica

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::nblist_autoupdate

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_narrow

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_wide

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::no_prof_info_in_silentout

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::no_scorefile

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::nodelay

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::nosignal

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::nproc

Referenced by add_rosetta_options_1(), and erraser2_test().

FileOptionKey const basic::options::OptionKeys::run::other_pose_scorefile

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::other_pose_to_scorefile

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::output_hbond_info

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::preserve_header

Referenced by add_rosetta_options_1(), main(), and match_main().

IntegerOptionKey const basic::options::OptionKeys::run::proc_id

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::profile

Referenced by add_rosetta_options_1(), basic::DynamicProfileThis::DynamicProfileThis(), basic::prof_reset(), basic::prof_show(), basic::prof_start_function_body(), basic::prof_stop_function_body(), and basic::DynamicProfileThis::~DynamicProfileThis().

StringOptionKey const basic::options::OptionKeys::run::protocol

Referenced by add_rosetta_options_1(), and main().

IntegerOptionKey const basic::options::OptionKeys::run::random_delay

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::randomize_missing_coords

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::rebuild_disulf

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_each_job

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_new_input

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::remove_ss_length_screen

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::repack_rate

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::repeat

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::rng

Referenced by add_rosetta_options_1().

StringOptionKey const basic::options::OptionKeys::run::rng_seed_device

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::run

Referenced by add_rosetta_options_1(), PerformanceBenchmark::execute(), and main().

BooleanOptionKey const basic::options::OptionKeys::run::score_only

Referenced by add_rosetta_options_1().

IntegerOptionKey const basic::options::OptionKeys::run::seed_offset

Referenced by add_rosetta_options_1().

RealOptionKey const basic::options::OptionKeys::run::show_simulation_in_pymol

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::shuffle

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::skip_set_reasonable_fold_tree

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::suppress_checkpoints

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::test_cycles

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::timer

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::update_pymol_on_conformation_changes_only

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::update_pymol_on_energy_changes_only

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::use_time_as_seed

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::version

Referenced by add_rosetta_options_1(), apps::pilot::frankdt::main(), and utility::save_crash_report_to_file().

RealOptionKey const basic::options::OptionKeys::run::wide_nblist_extension

Referenced by add_rosetta_options_1().

BooleanOptionKey const basic::options::OptionKeys::run::write_failures

Referenced by add_rosetta_options_1().