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basic::options::OptionKeys::docking Namespace Reference

Namespaces

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Variables

BooleanOptionKey const kick_relax
 
BooleanOptionKey const docking
 
BooleanOptionKey const view
 
BooleanOptionKey const no_filters
 
StringVectorOptionKey const design_chains
 
FileOptionKey const recover_sidechains
 
StringOptionKey const partners
 
BooleanOptionKey const docking_local_refine
 
BooleanOptionKey const low_res_protocol_only
 
StringOptionKey const docking_low_res_score
 
BooleanOptionKey const randomize1
 
BooleanOptionKey const randomize2
 
BooleanOptionKey const use_ellipsoidal_randomization
 
BooleanOptionKey const spin
 
RealVectorOptionKey const tilt
 
StringOptionKey const tilt1_center
 
StringOptionKey const tilt2_center
 
RealVectorOptionKey const dock_pert
 
RealOptionKey const uniform_trans
 
BooleanOptionKey const center_at_interface
 
IntegerOptionKey const dock_mcm_first_cycles
 
IntegerOptionKey const dock_mcm_second_cycles
 
IntegerOptionKey const docking_centroid_outer_cycles
 
IntegerOptionKey const docking_centroid_inner_cycles
 
BooleanOptionKey const dock_min
 
StringOptionKey const flexible_bb_docking
 
RealOptionKey const flexible_bb_docking_interface_dist
 
StringOptionKey const ensemble1
 
StringOptionKey const ensemble2
 
RealOptionKey const dock_mcm_trans_magnitude
 
RealOptionKey const dock_mcm_rot_magnitude
 
RealOptionKey const minimization_threshold
 
RealOptionKey const temperature
 
IntegerOptionKey const repack_period
 
BooleanOptionKey const extra_rottrial
 
BooleanOptionKey const dock_rtmin
 
BooleanOptionKey const sc_min
 
BooleanOptionKey const norepack1
 
BooleanOptionKey const norepack2
 
IntegerVectorOptionKey const bb_min_res
 
IntegerVectorOptionKey const sc_min_res
 
BooleanOptionKey const dock_ppk
 
IntegerOptionKey const max_repeats
 
RealVectorOptionKey const dock_lowres_filter
 
RealOptionKey const SymDock_lowres_filter
 
IntegerVectorOptionKey const multibody
 
BooleanOptionKey const ignore_default_docking_task
 
StringOptionKey const low_patch
 
StringOptionKey const high_patch
 
StringOptionKey const high_min_patch
 
StringOptionKey const pack_patch
 
BooleanOptionKey const use_legacy_protocol
 
RealOptionKey const docklowres_trans_magnitude
 
RealOptionKey const docklowres_rot_magnitude
 
BooleanOptionKey const enable_pymol_viewer
 
BooleanOptionKey const SymDock_reduce_motif_dock_weights
 
RealOptionKey const SymDock_fa_rep_max
 
RealOptionKey const SymDock_fa_sol_max
 

Variable Documentation

IntegerVectorOptionKey const basic::options::OptionKeys::docking::bb_min_res

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::center_at_interface

Referenced by add_rosetta_options_7().

StringVectorOptionKey const basic::options::OptionKeys::docking::design_chains

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::docking::dock_lowres_filter

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::dock_mcm_first_cycles

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::dock_mcm_rot_magnitude

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::dock_mcm_second_cycles

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::dock_mcm_trans_magnitude

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::dock_min

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::docking::dock_pert

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::docking::dock_ppk

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::dock_rtmin

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::docking
IntegerOptionKey const basic::options::OptionKeys::docking::docking_centroid_inner_cycles

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::docking_centroid_outer_cycles

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::docking_local_refine

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::docking_low_res_score

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::docklowres_rot_magnitude

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::docklowres_trans_magnitude

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::enable_pymol_viewer

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::ensemble1

Referenced by add_rosetta_options_7(), and main().

StringOptionKey const basic::options::OptionKeys::docking::ensemble2

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::docking::extra_rottrial

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::flexible_bb_docking

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::flexible_bb_docking_interface_dist

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::high_min_patch

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::high_patch

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::ignore_default_docking_task

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::kick_relax

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::low_patch

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::low_res_protocol_only

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::max_repeats

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::minimization_threshold

Referenced by add_rosetta_options_7().

IntegerVectorOptionKey const basic::options::OptionKeys::docking::multibody

Referenced by add_rosetta_options_7(), and my_main().

BooleanOptionKey const basic::options::OptionKeys::docking::no_filters

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::docking::norepack1

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::norepack2

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::pack_patch

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::partners
BooleanOptionKey const basic::options::OptionKeys::docking::randomize1

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::randomize2

Referenced by add_rosetta_options_7(), and main().

FileOptionKey const basic::options::OptionKeys::docking::recover_sidechains

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::repack_period

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::sc_min

Referenced by add_rosetta_options_7().

IntegerVectorOptionKey const basic::options::OptionKeys::docking::sc_min_res

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::spin

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::SymDock_fa_rep_max

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::SymDock_fa_sol_max

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::SymDock_lowres_filter

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::SymDock_reduce_motif_dock_weights

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::temperature

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::docking::tilt

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::tilt1_center

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::tilt2_center

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::uniform_trans

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::docking::use_ellipsoidal_randomization

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::use_legacy_protocol

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::view

Referenced by add_rosetta_options_7().