basic::options::OptionKeys::docking Namespace Reference

Namespaces
	ligand

Variables
BooleanOptionKey const	kick_relax
BooleanOptionKey const	docking
BooleanOptionKey const	view
BooleanOptionKey const	no_filters
StringVectorOptionKey const	design_chains
FileOptionKey const	recover_sidechains
StringOptionKey const	partners
BooleanOptionKey const	docking_local_refine
BooleanOptionKey const	low_res_protocol_only
StringOptionKey const	docking_low_res_score
BooleanOptionKey const	randomize1
BooleanOptionKey const	randomize2
BooleanOptionKey const	use_ellipsoidal_randomization
BooleanOptionKey const	spin
RealVectorOptionKey const	tilt
StringOptionKey const	tilt1_center
StringOptionKey const	tilt2_center
RealVectorOptionKey const	dock_pert
RealOptionKey const	uniform_trans
BooleanOptionKey const	center_at_interface
IntegerOptionKey const	dock_mcm_first_cycles
IntegerOptionKey const	dock_mcm_second_cycles
IntegerOptionKey const	docking_centroid_outer_cycles
IntegerOptionKey const	docking_centroid_inner_cycles
BooleanOptionKey const	dock_min
StringOptionKey const	flexible_bb_docking
RealOptionKey const	flexible_bb_docking_interface_dist
StringOptionKey const	ensemble1
StringOptionKey const	ensemble2
RealOptionKey const	dock_mcm_trans_magnitude
RealOptionKey const	dock_mcm_rot_magnitude
RealOptionKey const	minimization_threshold
RealOptionKey const	temperature
IntegerOptionKey const	repack_period
BooleanOptionKey const	extra_rottrial
BooleanOptionKey const	dock_rtmin
BooleanOptionKey const	sc_min
BooleanOptionKey const	norepack1
BooleanOptionKey const	norepack2
IntegerVectorOptionKey const	bb_min_res
IntegerVectorOptionKey const	sc_min_res
BooleanOptionKey const	dock_ppk
IntegerOptionKey const	max_repeats
RealVectorOptionKey const	dock_lowres_filter
RealOptionKey const	SymDock_lowres_filter
IntegerVectorOptionKey const	multibody
BooleanOptionKey const	ignore_default_docking_task
StringOptionKey const	low_patch
StringOptionKey const	high_patch
StringOptionKey const	high_min_patch
StringOptionKey const	pack_patch
BooleanOptionKey const	use_legacy_protocol
RealOptionKey const	docklowres_trans_magnitude
RealOptionKey const	docklowres_rot_magnitude
BooleanOptionKey const	enable_pymol_viewer
BooleanOptionKey const	SymDock_reduce_motif_dock_weights
RealOptionKey const	SymDock_fa_rep_max
RealOptionKey const	SymDock_fa_sol_max

Variable Documentation

IntegerVectorOptionKey const basic::options::OptionKeys::docking::bb_min_res

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::center_at_interface

Referenced by add_rosetta_options_7().

StringVectorOptionKey const basic::options::OptionKeys::docking::design_chains

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::docking::dock_lowres_filter

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::dock_mcm_first_cycles

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::dock_mcm_rot_magnitude

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::dock_mcm_second_cycles

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::dock_mcm_trans_magnitude

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::dock_min

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::docking::dock_pert

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::docking::dock_ppk

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::dock_rtmin

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::docking

Referenced by add_rosetta_options_7(), DockGlycansProtocol::apply(), main(), my_main(), and DockGlycansProtocol::record_pose_metrics().

IntegerOptionKey const basic::options::OptionKeys::docking::docking_centroid_inner_cycles

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::docking_centroid_outer_cycles

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::docking_local_refine

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::docking_low_res_score

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::docklowres_rot_magnitude

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::docklowres_trans_magnitude

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::enable_pymol_viewer

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::docking::ensemble1

Referenced by add_rosetta_options_7(), and main().

StringOptionKey const basic::options::OptionKeys::docking::ensemble2

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::docking::extra_rottrial

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::flexible_bb_docking

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::flexible_bb_docking_interface_dist

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::high_min_patch

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::high_patch

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::ignore_default_docking_task

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::kick_relax

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::low_patch

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::low_res_protocol_only

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::max_repeats

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::minimization_threshold

Referenced by add_rosetta_options_7().

IntegerVectorOptionKey const basic::options::OptionKeys::docking::multibody

Referenced by add_rosetta_options_7(), and my_main().

BooleanOptionKey const basic::options::OptionKeys::docking::no_filters

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::docking::norepack1

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::norepack2

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::pack_patch

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::partners

Referenced by add_rosetta_options_7(), and DockGlycansProtocol::apply().

BooleanOptionKey const basic::options::OptionKeys::docking::randomize1

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::randomize2

Referenced by add_rosetta_options_7(), and main().

FileOptionKey const basic::options::OptionKeys::docking::recover_sidechains

Referenced by add_rosetta_options_7().

IntegerOptionKey const basic::options::OptionKeys::docking::repack_period

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::sc_min

Referenced by add_rosetta_options_7().

IntegerVectorOptionKey const basic::options::OptionKeys::docking::sc_min_res

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::spin

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::SymDock_fa_rep_max

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::docking::SymDock_fa_sol_max

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::docking::SymDock_lowres_filter

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::SymDock_reduce_motif_dock_weights

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::docking::temperature

Referenced by add_rosetta_options_7().

RealVectorOptionKey const basic::options::OptionKeys::docking::tilt

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::tilt1_center

Referenced by add_rosetta_options_7().

StringOptionKey const basic::options::OptionKeys::docking::tilt2_center

Referenced by add_rosetta_options_7().

RealOptionKey const basic::options::OptionKeys::docking::uniform_trans

Referenced by add_rosetta_options_7(), and main().

BooleanOptionKey const basic::options::OptionKeys::docking::use_ellipsoidal_randomization

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::use_legacy_protocol

Referenced by add_rosetta_options_7().

BooleanOptionKey const basic::options::OptionKeys::docking::view

Referenced by add_rosetta_options_7().