Rosetta  2020.37
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Functions
cluster::energy_based_clustering Namespace Reference

Functions

BooleanOptionKey const energy_based_clustering ("cluster:energy_based_clustering")
 
BooleanOptionKey const prerelax ("cluster:energy_based_clustering:prerelax")
 
IntegerOptionKey const relax_rounds ("cluster:energy_based_clustering:relax_rounds")
 
StringOptionKey const cluster_by ("cluster:energy_based_clustering:cluster_by")
 
BooleanOptionKey const use_CB ("cluster:energy_based_clustering:use_CB")
 
RealOptionKey const cluster_radius ("cluster:energy_based_clustering:cluster_radius")
 
IntegerVectorOptionKey const residues_to_ignore ("cluster:energy_based_clustering:residues_to_ignore")
 
IntegerVectorOptionKey const chains_to_ignore ("cluster:energy_based_clustering:chains_to_ignore")
 
IntegerOptionKey const limit_structures_per_cluster ("cluster:energy_based_clustering:limit_structures_per_cluster")
 
IntegerOptionKey const limit_clusters ("cluster:energy_based_clustering:limit_clusters")
 
BooleanOptionKey const cyclic ("cluster:energy_based_clustering:cyclic")
 
IntegerOptionKey const cyclic_symmetry ("cluster:energy_based_clustering:cyclic_symmetry")
 
BooleanOptionKey const cyclic_symmetry_mirroring ("cluster:energy_based_clustering:cyclic_symmetry_mirroring")
 
RealOptionKey const cyclic_symmetry_threshold ("cluster:energy_based_clustering:cyclic_symmetry_threshold")
 
BooleanOptionKey const cluster_cyclic_permutations ("cluster:energy_based_clustering:cluster_cyclic_permutations")
 
IntegerOptionKey const cyclic_permutation_offset ("cluster:energy_based_clustering:cyclic_permutation_offset")
 
BooleanOptionKey const perform_ABOXYZ_bin_analysis ("cluster:energy_based_clustering:perform_ABOXYZ_bin_analysis")
 
BooleanOptionKey const mutate_to_ala ("cluster:energy_based_clustering:mutate_to_ala")
 
IntegerVectorOptionKey const disulfide_positions ("cluster:energy_based_clustering:disulfide_positions")
 
BooleanOptionKey const homooligomer_swap ("cluster:energy_based_clustering:homooligomer_swap")
 
BooleanOptionKey const silent_output ("cluster:energy_based_clustering:silent_output")
 
FileVectorOptionKey const cst_file ("cluster:energy_based_clustering:cst_file")
 
StringVectorOptionKey const extra_rms_atoms ("cluster:energy_based_clustering:extra_rms_atoms")
 
BooleanOptionKey const rebuild_all_in_dihedral_mode ("cluster:energy_based_clustering:rebuild_all_in_dihedral_mode")
 

Function Documentation

IntegerVectorOptionKey const cluster::energy_based_clustering::chains_to_ignore ( "cluster:energy_based_clustering:chains_to_ignore"  )
StringOptionKey const cluster::energy_based_clustering::cluster_by ( "cluster:energy_based_clustering:cluster_by"  )
BooleanOptionKey const cluster::energy_based_clustering::cluster_cyclic_permutations ( "cluster:energy_based_clustering:cluster_cyclic_permutations"  )
RealOptionKey const cluster::energy_based_clustering::cluster_radius ( "cluster:energy_based_clustering:cluster_radius"  )
FileVectorOptionKey const cluster::energy_based_clustering::cst_file ( "cluster:energy_based_clustering:cst_file"  )
BooleanOptionKey const cluster::energy_based_clustering::cyclic ( "cluster:energy_based_clustering:cyclic"  )
IntegerOptionKey const cluster::energy_based_clustering::cyclic_permutation_offset ( "cluster:energy_based_clustering:cyclic_permutation_offset"  )
IntegerOptionKey const cluster::energy_based_clustering::cyclic_symmetry ( "cluster:energy_based_clustering:cyclic_symmetry"  )
BooleanOptionKey const cluster::energy_based_clustering::cyclic_symmetry_mirroring ( "cluster:energy_based_clustering:cyclic_symmetry_mirroring"  )
RealOptionKey const cluster::energy_based_clustering::cyclic_symmetry_threshold ( "cluster:energy_based_clustering:cyclic_symmetry_threshold"  )
IntegerVectorOptionKey const cluster::energy_based_clustering::disulfide_positions ( "cluster:energy_based_clustering:disulfide_positions"  )
BooleanOptionKey const cluster::energy_based_clustering::energy_based_clustering ( "cluster:energy_based_clustering"  )
StringVectorOptionKey const cluster::energy_based_clustering::extra_rms_atoms ( "cluster:energy_based_clustering:extra_rms_atoms"  )
BooleanOptionKey const cluster::energy_based_clustering::homooligomer_swap ( "cluster:energy_based_clustering:homooligomer_swap"  )
IntegerOptionKey const cluster::energy_based_clustering::limit_clusters ( "cluster:energy_based_clustering:limit_clusters"  )
IntegerOptionKey const cluster::energy_based_clustering::limit_structures_per_cluster ( "cluster:energy_based_clustering:limit_structures_per_cluster"  )
BooleanOptionKey const cluster::energy_based_clustering::mutate_to_ala ( "cluster:energy_based_clustering:mutate_to_ala"  )
BooleanOptionKey const cluster::energy_based_clustering::perform_ABOXYZ_bin_analysis ( "cluster:energy_based_clustering:perform_ABOXYZ_bin_analysis"  )
BooleanOptionKey const cluster::energy_based_clustering::prerelax ( "cluster:energy_based_clustering:prerelax"  )
BooleanOptionKey const cluster::energy_based_clustering::rebuild_all_in_dihedral_mode ( "cluster:energy_based_clustering:rebuild_all_in_dihedral_mode"  )
IntegerOptionKey const cluster::energy_based_clustering::relax_rounds ( "cluster:energy_based_clustering:relax_rounds"  )
IntegerVectorOptionKey const cluster::energy_based_clustering::residues_to_ignore ( "cluster:energy_based_clustering:residues_to_ignore"  )
BooleanOptionKey const cluster::energy_based_clustering::silent_output ( "cluster:energy_based_clustering:silent_output"  )
BooleanOptionKey const cluster::energy_based_clustering::use_CB ( "cluster:energy_based_clustering:use_CB"  )