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Classes | Variables
local Namespace Reference

Classes

struct  HbondInfo
 

Variables

basic::options::BooleanOptionKey
const 
AvNAPSA_positive ("AvNAPSA_positive")
 
basic::options::BooleanOptionKey
const 
AvNAPSA_negative ("AvNAPSA_negative")
 
basic::options::BooleanOptionKey
const 
target_net_charge_active ("target_net_charge_active")
 
basic::options::IntegerOptionKey
const 
target_net_charge ("target_net_charge")
 
basic::options::IntegerOptionKey
const 
surface_atom_cutoff ("surface_atom_cutoff")
 
basic::options::IntegerOptionKey
const 
surface_residue_cutoff ("surface_residue_cutoff")
 
basic::options::BooleanOptionKey
const 
include_arg ("include_arg")
 
basic::options::BooleanOptionKey
const 
include_lys ("include_lys")
 
basic::options::BooleanOptionKey
const 
include_asp ("include_asp")
 
basic::options::BooleanOptionKey
const 
include_glu ("include_glu")
 
basic::options::RealOptionKey const refweight_arg ("refweight_arg")
 
basic::options::RealOptionKey const refweight_lys ("refweight_lys")
 
basic::options::RealOptionKey const refweight_asp ("refweight_asp")
 
basic::options::RealOptionKey const refweight_glu ("refweight_glu")
 
basic::options::BooleanOptionKey
const 
dont_mutate_glyprocys ("dont_mutate_glyprocys")
 
basic::options::BooleanOptionKey
const 
dont_mutate_correct_charge ("dont_mutate_correct_charge")
 
basic::options::BooleanOptionKey
const 
dont_mutate_hbonded_sidechains ("dont_mutate_hbonded_sidechains")
 
basic::options::BooleanOptionKey
const 
pre_packminpack ("pre_packminpack")
 
basic::options::IntegerOptionKey
const 
nstruct ("nstruct")
 
basic::options::BooleanOptionKey
const 
compare_residue_energies_all ("compare_residue_energies_all")
 
basic::options::BooleanOptionKey
const 
compare_residue_energies_mut ("compare_residue_energies_mut")
 
basic::options::FileOptionKey const partner1 ("partner1")
 
basic::options::FileOptionKey const partner2 ("partner2")
 
basic::options::FileOptionKey const match_pdb ("match_pdb")
 
basic::options::IntegerOptionKey
const 
partner2_residue ("partner2_residue")
 
basic::options::BooleanOptionKey
const 
skip_sitegraft_repack ("skip_sitegraft_repack")
 
basic::options::RealOptionKey const atom_sasa_cutoff ("atom_sasa_cutoff")
 
basic::options::RealOptionKey const neighbor_distance_cutoff ("neighbor_distance_cutoff")
 
basic::options::IntegerOptionKey
const 
window_width ("window_width")
 
basic::options::IntegerOptionKey
const 
helix_length ("helix_length")
 
basic::options::StringOptionKey
const 
reference_zinc_site ("reference_zinc_site")
 
basic::options::IntegerOptionKey
const 
first_ref_his ("first_ref_his")
 
basic::options::IntegerOptionKey
const 
ref_zinc ("ref_zinc")
 
basic::options::RealOptionKey const temperature ("temperature")
 
basic::options::IntegerOptionKey
const 
n_moves ("n_moves")
 
basic::options::RealOptionKey const constraint_weight ("constraint_weight")
 
basic::options::RealOptionKey const max_angle ("max_angle")
 
basic::options::IntegerOptionKey
const 
small_moves ("small_moves")
 
basic::options::IntegerOptionKey
const 
shear_moves ("shear_moves")
 
basic::options::StringOptionKey
const 
metal_type ("metal_type")
 
basic::options::RealOptionKey const metal_ligand_distance_cutoff ("metal_ligand_distance_cutoff")
 
basic::options::IntegerOptionKey
const 
min_total_coord_atoms ("min_total_coord_atoms")
 
basic::options::IntegerOptionKey
const 
min_local_coord_atoms ("min_local_coord_atoms")
 
basic::options::IntegerOptionKey
const 
min_coord_res ("min_coord_res")
 
basic::options::IntegerOptionKey
const 
max_res_span ("max_res_span")
 
basic::options::BooleanOptionKey
const 
require_bordering_ss ("require_bordering_ss")
 
basic::options::IntegerOptionKey
const 
max_loop_size ("max_loop_size")
 
basic::options::BooleanOptionKey
const 
helices_only ("helices_only")
 
basic::options::BooleanOptionKey
const 
strict_ss_changes ("strict_ss_changes")
 
basic::options::BooleanOptionKey
const 
append_nonlocal_residues ("append_nonlocal_residues")
 
basic::options::StringOptionKey
const 
allowed_elements ("allowed_elements")
 
basic::options::BooleanOptionKey
const 
allow_his ("allow_his")
 
basic::options::BooleanOptionKey
const 
allow_de ("allow_de")
 
basic::options::StringOptionKey
const 
secstruct ("secstruct")
 
basic::options::RealOptionKey const sampling_range ("sampling_range")
 
basic::options::RealOptionKey const sampling_increment ("sampling_increment")
 
basic::options::StringOptionKey
const 
output_name ("output_name")
 

Variable Documentation

basic::options::BooleanOptionKey const local::allow_de("allow_de")
basic::options::BooleanOptionKey const local::allow_his("allow_his")
basic::options::StringOptionKey const local::allowed_elements("allowed_elements")
basic::options::BooleanOptionKey const local::append_nonlocal_residues("append_nonlocal_residues")
basic::options::RealOptionKey const local::atom_sasa_cutoff("atom_sasa_cutoff")
basic::options::BooleanOptionKey const local::AvNAPSA_negative("AvNAPSA_negative")
basic::options::BooleanOptionKey const local::AvNAPSA_positive("AvNAPSA_positive")
basic::options::BooleanOptionKey const local::compare_residue_energies_all("compare_residue_energies_all")
basic::options::BooleanOptionKey const local::compare_residue_energies_mut("compare_residue_energies_mut")
basic::options::RealOptionKey const local::constraint_weight("constraint_weight")
basic::options::BooleanOptionKey const local::dont_mutate_correct_charge("dont_mutate_correct_charge")

Referenced by main(), and supercharge::set_resfile().

basic::options::BooleanOptionKey const local::dont_mutate_glyprocys("dont_mutate_glyprocys")

Referenced by main(), and supercharge::set_resfile().

basic::options::BooleanOptionKey const local::dont_mutate_hbonded_sidechains("dont_mutate_hbonded_sidechains")

Referenced by main(), and supercharge::set_resfile().

basic::options::IntegerOptionKey const local::first_ref_his("first_ref_his")

Referenced by main().

basic::options::BooleanOptionKey const local::helices_only("helices_only")
basic::options::IntegerOptionKey const local::helix_length("helix_length")

Referenced by main().

basic::options::BooleanOptionKey const local::include_arg("include_arg")
basic::options::BooleanOptionKey const local::include_asp("include_asp")
basic::options::BooleanOptionKey const local::include_glu("include_glu")
basic::options::BooleanOptionKey const local::include_lys("include_lys")
basic::options::FileOptionKey const local::match_pdb("match_pdb")

Referenced by main().

basic::options::RealOptionKey const local::max_angle("max_angle")

Referenced by HDmakerMover::apply(), and main().

basic::options::IntegerOptionKey const local::max_loop_size("max_loop_size")
basic::options::IntegerOptionKey const local::max_res_span("max_res_span")
basic::options::RealOptionKey const local::metal_ligand_distance_cutoff("metal_ligand_distance_cutoff")
basic::options::StringOptionKey const local::metal_type("metal_type")
basic::options::IntegerOptionKey const local::min_coord_res("min_coord_res")
basic::options::IntegerOptionKey const local::min_local_coord_atoms("min_local_coord_atoms")
basic::options::IntegerOptionKey const local::min_total_coord_atoms("min_total_coord_atoms")
basic::options::IntegerOptionKey const local::n_moves("n_moves")

Referenced by main().

basic::options::RealOptionKey const local::neighbor_distance_cutoff("neighbor_distance_cutoff")
basic::options::IntegerOptionKey const local::nstruct("nstruct")
basic::options::StringOptionKey const local::output_name("output_name")
basic::options::FileOptionKey const local::partner1("partner1")

Referenced by main().

basic::options::FileOptionKey const local::partner2("partner2")

Referenced by main().

basic::options::IntegerOptionKey const local::partner2_residue("partner2_residue")

Referenced by main().

basic::options::BooleanOptionKey const local::pre_packminpack("pre_packminpack")
basic::options::IntegerOptionKey const local::ref_zinc("ref_zinc")

Referenced by main().

basic::options::StringOptionKey const local::reference_zinc_site("reference_zinc_site")

Referenced by main().

basic::options::RealOptionKey const local::refweight_arg("refweight_arg")
basic::options::RealOptionKey const local::refweight_asp("refweight_asp")
basic::options::RealOptionKey const local::refweight_glu("refweight_glu")
basic::options::RealOptionKey const local::refweight_lys("refweight_lys")
basic::options::BooleanOptionKey const local::require_bordering_ss("require_bordering_ss")
basic::options::RealOptionKey const local::sampling_increment("sampling_increment")
basic::options::RealOptionKey const local::sampling_range("sampling_range")
basic::options::StringOptionKey const local::secstruct("secstruct")
basic::options::IntegerOptionKey const local::shear_moves("shear_moves")

Referenced by add_rosetta_options_8(), and main().

basic::options::BooleanOptionKey const local::skip_sitegraft_repack("skip_sitegraft_repack")

Referenced by main().

basic::options::IntegerOptionKey const local::small_moves("small_moves")

Referenced by add_rosetta_options_12(), and main().

basic::options::BooleanOptionKey const local::strict_ss_changes("strict_ss_changes")
basic::options::IntegerOptionKey const local::surface_atom_cutoff("surface_atom_cutoff")
basic::options::IntegerOptionKey const local::surface_residue_cutoff("surface_residue_cutoff")

Referenced by main(), and supercharge::set_surface().

basic::options::IntegerOptionKey const local::target_net_charge("target_net_charge")
basic::options::BooleanOptionKey const local::target_net_charge_active("target_net_charge_active")
basic::options::RealOptionKey const local::temperature("temperature")
basic::options::IntegerOptionKey const local::window_width("window_width")

Referenced by main().