Rosetta  2019.47
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Functions | Variables
helix_from_sequence.cc File Reference
#include <devel/init.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/pose_creation/HelixFromSequence.hh>
#include <protocols/membrane/AddMembraneMover.hh>
#include <protocols/membrane/OptimizeProteinEmbeddingMover.hh>
#include <protocols/membrane/TransformIntoMembraneMover.hh>
#include <protocols/relax/membrane/MPRangeRelaxMover.hh>
#include <protocols/simple_moves/ScoreMover.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/util.hh>
#include <apps/benchmark/performance/init_util.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/types.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/mp.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <basic/Tracer.hh>
#include <cstdlib>
#include <string>

Functions

std::string read_fasta ()
 
bool read_membrane ()
 
bool optimize_embedding ()
 
bool skipping_relax ()
 
void helix_from_sequence ()
 
int main (int argc, char *argv[])
 

Variables

static basic::Tracer TR ("apps.pilot.jkleman.helix_from_sequence")
 

Detailed Description

Creates a helix pose from the sequence only, works for soluble and membrane proteins; the latter will be transformed into the membrane

Author
JKLeman (julia.nosp@m..koe.nosp@m.hler1.nosp@m.982@.nosp@m.gmail.nosp@m..com)

Function Documentation

void helix_from_sequence ( )
int main ( int  argc,
char *  argv[] 
)
bool optimize_embedding ( )
std::string read_fasta ( )
bool read_membrane ( )
bool skipping_relax ( )

Variable Documentation

basic::Tracer TR("apps.pilot.jkleman.helix_from_sequence")
static