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Variables
test.Workshop7test Namespace Reference

Variables

tuple pose = pose_from_file("../test/data/workshops/complex.start.pdb")
 
int jump_num = 1
 
tuple pert_mover = rigid_moves.RigidBodyPerturbMover(jump_num, 8, 3)
 
tuple randomize1 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_upstream)
 
tuple randomize2 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_downstream)
 
tuple slid = protocols.docking.DockingSlideIntoContact(jump_num)
 
tuple slide = protocols.docking.FaDockingSlideIntoContact(jump_num)
 
tuple movemap = MoveMap()
 
tuple scorefxn = create_score_function("ref2015")
 
tuple min_mover = protocols.minimization_packing.MinMover()
 
tuple switch_low = SwitchResidueTypeSetMover("centroid")
 
tuple pose_high = Pose()
 
tuple pose_low = Pose()
 
tuple scorefxn_low = create_score_function("interchain_cen")
 
tuple dock_lowres = protocols.docking.DockingLowRes(scorefxn_low, jump_num)
 
tuple output = tempfile.mkstemp()
 
tuple jd = PyJobDistributor(output, 10, scorefxn_low)
 
tuple native_pose = pose_from_file("../test/data/workshops/complex.high.pdb")
 
tuple starting_pose = Pose()
 
tuple scorefxn_high = create_score_function("ref2015.wts", "docking")
 
tuple dock_hires = protocols.docking.DockMCMProtocol()
 
tuple recover_sidechains = protocols.simple_moves.ReturnSidechainMover(pose_high)
 

Variable Documentation

tuple test.Workshop7test.dock_hires = protocols.docking.DockMCMProtocol()
tuple test.Workshop7test.dock_lowres = protocols.docking.DockingLowRes(scorefxn_low, jump_num)
tuple test.Workshop7test.jd = PyJobDistributor(output, 10, scorefxn_low)
int test.Workshop7test.jump_num = 1
tuple test.Workshop7test.min_mover = protocols.minimization_packing.MinMover()
tuple test.Workshop7test.movemap = MoveMap()
tuple test.Workshop7test.native_pose = pose_from_file("../test/data/workshops/complex.high.pdb")
tuple test.Workshop7test.output = tempfile.mkstemp()
tuple test.Workshop7test.pert_mover = rigid_moves.RigidBodyPerturbMover(jump_num, 8, 3)
tuple test.Workshop7test.pose = pose_from_file("../test/data/workshops/complex.start.pdb")
tuple test.Workshop7test.pose_high = Pose()
tuple test.Workshop7test.pose_low = Pose()
tuple test.Workshop7test.randomize1 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_upstream)

Referenced by add_rosetta_options_7().

tuple test.Workshop7test.randomize2 = rigid_moves.RigidBodyRandomizeMover(pose, jump_num, rigid_moves.partner_downstream)

Referenced by add_rosetta_options_7(), and main().

tuple test.Workshop7test.recover_sidechains = protocols.simple_moves.ReturnSidechainMover(pose_high)

Referenced by add_rosetta_options_7().

tuple test.Workshop7test.scorefxn = create_score_function("ref2015")
tuple test.Workshop7test.scorefxn_high = create_score_function("ref2015.wts", "docking")
tuple test.Workshop7test.scorefxn_low = create_score_function("interchain_cen")
tuple test.Workshop7test.slid = protocols.docking.DockingSlideIntoContact(jump_num)
tuple test.Workshop7test.slide = protocols.docking.FaDockingSlideIntoContact(jump_num)
tuple test.Workshop7test.starting_pose = Pose()

Referenced by supercharge.apply(), and main().

tuple test.Workshop7test.switch_low = SwitchResidueTypeSetMover("centroid")