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Variables
basic::options::OptionKeys::enzdes Namespace Reference

Variables

BooleanOptionKey const enzdes
 
StringOptionKey const checkpoint
 
BooleanOptionKey const enz_score
 
BooleanOptionKey const enz_repack
 
BooleanOptionKey const cst_opt
 
BooleanOptionKey const cst_predock
 
RealOptionKey const trans_magnitude
 
RealOptionKey const rot_magnitude
 
RealOptionKey const dock_trials
 
BooleanOptionKey const cst_min
 
BooleanOptionKey const cst_design
 
IntegerOptionKey const design_min_cycles
 
BooleanOptionKey const make_consensus_mutations
 
BooleanOptionKey const bb_min
 
RealOptionKey const bb_min_allowed_dev
 
RealOptionKey const loop_bb_min_allowed_dev
 
RealOptionKey const minimize_ligand_torsions
 
RealOptionKey const minimize_all_ligand_torsions
 
BooleanOptionKey const chi_min
 
BooleanOptionKey const min_all_jumps
 
BooleanOptionKey const cst_dock
 
BooleanOptionKey const run_ligand_motifs
 
BooleanOptionKey const enz_debug
 
FileOptionKey const cstfile
 
FileOptionKey const enz_loops_file
 
BooleanOptionKey const flexbb_protocol
 
BooleanOptionKey const remodel_protocol
 
BooleanOptionKey const kic_loop_sampling
 
StringOptionKey const dump_loop_samples
 
BooleanOptionKey const fix_catalytic_aa
 
IntegerOptionKey const additional_packing_ligand_rb_confs
 
IntegerOptionKey const ex_catalytic_rot
 
IntegerOptionKey const single_loop_ensemble_size
 
IntegerOptionKey const loop_generator_trials
 
BooleanOptionKey const no_catres_min_in_loopgen
 
RealOptionKey const mc_kt_low
 
RealOptionKey const mc_kt_high
 
RealOptionKey const min_cacb_deviation
 
RealOptionKey const max_bb_deviation
 
RealOptionKey const max_bb_deviation_from_startstruct
 
IntegerOptionKey const remodel_trials
 
BooleanOptionKey const remodel_secmatch
 
BooleanOptionKey const dump_inverse_rotamers
 
RealOptionKey const remodel_aggressiveness
 
RealOptionKey const favor_native_res
 
BooleanOptionKey const detect_design_interface
 
BooleanOptionKey const include_catres_in_interface_detection
 
BooleanOptionKey const arg_sweep_interface
 
RealOptionKey const arg_sweep_cutoff
 
RealOptionKey const cut1
 
RealOptionKey const cut2
 
RealOptionKey const cut3
 
RealOptionKey const cut4
 
RealOptionKey const lig_packer_weight
 
BooleanOptionKey const no_unconstrained_repack
 
RealOptionKey const secmatch_Ecutoff
 
FileOptionKey const change_lig
 
StringOptionKey const process_ligrot_separately
 
BooleanOptionKey const start_from_random_rb_conf
 
RealOptionKey const bb_bump_cutoff
 
RealOptionKey const sc_sc_bump_cutoff
 
BooleanOptionKey const no_packstat_calculation
 
StringOptionKey const compare_native
 
BooleanOptionKey const final_repack_without_ligand
 
BooleanOptionKey const dump_final_repack_without_ligand_pdb
 
BooleanOptionKey const parser_read_cloud_pdb
 

Variable Documentation

IntegerOptionKey const basic::options::OptionKeys::enzdes::additional_packing_ligand_rb_confs

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::arg_sweep_cutoff

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::arg_sweep_interface

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::bb_bump_cutoff

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::bb_min

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::bb_min_allowed_dev

Referenced by add_rosetta_options_8().

FileOptionKey const basic::options::OptionKeys::enzdes::change_lig

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::enzdes::checkpoint

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::chi_min

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::enzdes::compare_native

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_design

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_dock

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_min

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_opt

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::cst_predock

Referenced by add_rosetta_options_8().

FileOptionKey const basic::options::OptionKeys::enzdes::cstfile

Referenced by add_rosetta_options_8(), and main().

RealOptionKey const basic::options::OptionKeys::enzdes::cut1

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::cut2

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::cut3

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::cut4

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::design_min_cycles

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::detect_design_interface

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::dock_trials

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::dump_final_repack_without_ligand_pdb

Referenced by add_rosetta_options_8(), and main().

BooleanOptionKey const basic::options::OptionKeys::enzdes::dump_inverse_rotamers

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::enzdes::dump_loop_samples

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_debug

Referenced by add_rosetta_options_8().

FileOptionKey const basic::options::OptionKeys::enzdes::enz_loops_file

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_repack

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enz_score

Referenced by add_rosetta_options_8(), and main().

BooleanOptionKey const basic::options::OptionKeys::enzdes::enzdes

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::ex_catalytic_rot

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::favor_native_res
BooleanOptionKey const basic::options::OptionKeys::enzdes::final_repack_without_ligand

Referenced by add_rosetta_options_8(), and main().

BooleanOptionKey const basic::options::OptionKeys::enzdes::fix_catalytic_aa

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::flexbb_protocol

Referenced by add_rosetta_options_8(), and main().

BooleanOptionKey const basic::options::OptionKeys::enzdes::include_catres_in_interface_detection

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::kic_loop_sampling

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::lig_packer_weight

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::loop_bb_min_allowed_dev

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::loop_generator_trials

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::make_consensus_mutations

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::max_bb_deviation

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::max_bb_deviation_from_startstruct

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::mc_kt_high

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::mc_kt_low

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::min_all_jumps

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::min_cacb_deviation

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::minimize_all_ligand_torsions

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::minimize_ligand_torsions

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::no_catres_min_in_loopgen

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::no_packstat_calculation

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::no_unconstrained_repack

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::parser_read_cloud_pdb

Referenced by add_rosetta_options_8().

StringOptionKey const basic::options::OptionKeys::enzdes::process_ligrot_separately

Referenced by add_rosetta_options_8(), and main().

RealOptionKey const basic::options::OptionKeys::enzdes::remodel_aggressiveness

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::remodel_protocol

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::remodel_secmatch

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::remodel_trials

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::rot_magnitude

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::run_ligand_motifs

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::sc_sc_bump_cutoff

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::secmatch_Ecutoff

Referenced by add_rosetta_options_8().

IntegerOptionKey const basic::options::OptionKeys::enzdes::single_loop_ensemble_size

Referenced by add_rosetta_options_8().

BooleanOptionKey const basic::options::OptionKeys::enzdes::start_from_random_rb_conf

Referenced by add_rosetta_options_8().

RealOptionKey const basic::options::OptionKeys::enzdes::trans_magnitude

Referenced by add_rosetta_options_8().