Rosetta  2020.37
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Variables
basic::options::OptionKeys::score::rna Namespace Reference

Variables

BooleanOptionKey const rna
 
StringOptionKey const rna_base_pair_xy_filename
 
BooleanOptionKey const disable_orientation_dependent_rna_ch_o_bonds
 
StringOptionKey const rna_suite_potential
 
StringOptionKey const suiteness_bonus
 
BooleanOptionKey const rna_torsion_skip_chainbreak
 
BooleanOptionKey const rna_chemical_shift_verbose
 
BooleanOptionKey const rna_chemical_shift_larmord
 
StringOptionKey const rna_chemical_shift_exp_data
 
StringOptionKey const rna_chemical_shift_larmord_par
 
StringOptionKey const rna_chemical_shift_larmord_wt
 
StringOptionKey const rna_chemical_shift_larmord_ref
 
StringOptionKey const rna_chemical_shift_larmord_nei
 
RealOptionKey const rna_chemical_shift_larmord_cut
 
RealOptionKey const rna_chemical_shift_larmord_beta
 
StringOptionKey const rna_chemical_shift_H5_prime_mode
 
IntegerVectorOptionKey const rna_chemical_shift_include_res
 
BooleanOptionKey const DMS_separate_features
 
BooleanOptionKey const DMS_careful_base_pair_classifier
 
RealOptionKey const rna_chem_map_lores_weight
 
BooleanOptionKey const use_2prime_OH_potential
 
BooleanOptionKey const use_rna_chi_potential
 
BooleanOptionKey const include_neighbor_base_stacks
 
BooleanOptionKey const FA_low_res_rnp_scoring
 
RealOptionKey const free_suite_bonus
 
RealOptionKey const free_sugar_bonus
 
RealOptionKey const free_2HOprime_bonus
 
RealOptionKey const syn_G_potential_bonus
 
BooleanOptionKey const rna_bulge_bonus_once_per_loop
 
RealOptionKey const pack_phosphate_penalty
 

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::score::rna::disable_orientation_dependent_rna_ch_o_bonds

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::DMS_careful_base_pair_classifier

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::DMS_separate_features

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::FA_low_res_rnp_scoring

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::free_2HOprime_bonus

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::free_sugar_bonus

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::free_suite_bonus

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::include_neighbor_base_stacks

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::pack_phosphate_penalty

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_base_pair_xy_filename

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna_bulge_bonus_once_per_loop

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::rna_chem_map_lores_weight

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_exp_data

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_H5_prime_mode

Referenced by add_rosetta_options_2().

IntegerVectorOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_include_res

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_beta

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_cut

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_nei

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_par

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_ref

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_larmord_wt

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna_chemical_shift_verbose

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::rna_suite_potential

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::rna_torsion_skip_chainbreak

Referenced by add_rosetta_options_2().

StringOptionKey const basic::options::OptionKeys::score::rna::suiteness_bonus

Referenced by add_rosetta_options_2().

RealOptionKey const basic::options::OptionKeys::score::rna::syn_G_potential_bonus

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::use_2prime_OH_potential

Referenced by add_rosetta_options_2().

BooleanOptionKey const basic::options::OptionKeys::score::rna::use_rna_chi_potential

Referenced by add_rosetta_options_2().