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carbohydrates.OptionKeys.gen.hh File Reference

basic::options::OptionKeys collection More...

#include <basic/options/keys/OptionKeys.hh>

Namespaces

 basic
 Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input.
 
 basic::options
 
 basic::options::OptionKeys
 
 basic::options::OptionKeys::carbohydrates
 
 basic::options::OptionKeys::carbohydrates::glycopeptide_docking
 
 basic::options::OptionKeys::carbohydrates::glycan_sampler
 
 basic::options::OptionKeys::carbohydrates::clash_check
 

Variables

BooleanOptionKey const basic::options::OptionKeys::carbohydrates::carbohydrates
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycam_pdb_format
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::linkage_conformer_data_file
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::glycopeptide_docking
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::residue_to_glycosylate
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::anchor_residue
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::low_res
 
IntegerOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::high_res_outer_cycles
 
IntegerOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::low_res_outer_cycles
 
IntegerOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::low_res_inner_cycles
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::high_res
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::substrate_type
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::tree_type
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::randomize_substrate_torsions
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::enable_backbone_moves_pp
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::prevent_anchor_repacking
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::sugardonor_residue
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::output_debug_pdbs
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::fix_weights
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::nevery_interface
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::ntotal_backbone
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::allow_glycan_torsion_moves
 
RealOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::interface_distance
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::score_only
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::output_distance_metrics
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::preglycosylate_residues
 
StringOptionKey const basic::options::OptionKeys::carbohydrates::glycopeptide_docking::preglycosylate_sugar_names
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_test
 
IntegerOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_rounds
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::min_rings
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::final_min_glycans
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_movie
 
RealOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_kt
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::glycan_sampler_refine
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::cartmin
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::tree_based_min_pack
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::population_based_conformer_sampling
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::glycan_sampler::use_gaussian_sampling
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::clash_check
 
StringVectorOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::glycan_branches
 
StringVectorOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::check_chains
 
RealOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::soft_clash
 
RealOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::cb_clash_distance
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::ignore_hydrogens
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::ignore_full_res_output
 
BooleanOptionKey const basic::options::OptionKeys::carbohydrates::clash_check::output_per_glycan_data
 

Detailed Description

basic::options::OptionKeys collection

Author
Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)
James M. Thompson (tex@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)