Rosetta  2019.47
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Functions | Variables
erraser_single_res_analysis Namespace Reference

Functions

def find_chi_angle_std_pdb
 
def syn_anti_check
 
def extract_info
 

Variables

tuple file_path = os.path.split( os.path.abspath(__file__) )
 
tuple prefix = parse_options( sys.argv, 'prefix', '' )
 
tuple res = parse_options( sys.argv, 'res', '' )
 
tuple outfile = parse_options( sys.argv, 'out', 'erraser_single_res.analysis' )
 
list data = []
 
tuple pdb_list = sorted( glob.glob( prefix + '_*.pdb') )
 
int pdb_id = 0
 
int start_min_score = 0
 
string name = 'start_min'
 
tuple out = open(outfile, 'w')
 
string score = '%9.1f'
 

Function Documentation

def erraser_single_res_analysis.extract_info (   pdb,
  res,
  name 
)
def erraser_single_res_analysis.find_chi_angle_std_pdb (   input_pdb,
  res_find 
)
def erraser_single_res_analysis.syn_anti_check (   chi)

Referenced by extract_info().

Variable Documentation

list erraser_single_res_analysis.data = []
tuple erraser_single_res_analysis.file_path = os.path.split( os.path.abspath(__file__) )
string erraser_single_res_analysis.name = 'start_min'
tuple erraser_single_res_analysis.out = open(outfile, 'w')

Referenced by add_rosetta_options_0(), add_rosetta_options_13(), add_rosetta_options_6(), add_rosetta_options_7(), calc_rama_scores(), calc_scores(), numeric::AgglomerativeHierarchicalClusterer.cluster(), basic::ComparingTracer.ComparingTracer(), convert(), numeric::alignment.coordinate_array_broadcast_rmsd(), numeric::alignment.coordinate_array_rmsd(), numeric::alignment.coordinate_array_superimpose(), utility::file.create_blank_file(), numeric::geometry::hashing::xyzStripeHash.debug_pdb(), supercharge.design_supercharge(), dump_table(), fmt::internal.format_system_error(), fmt.format_system_error(), go_main(), utility::file.gunzip(), harvest_motifs(), numeric::alignment.indexed_coordinate_array_broadcast_rmsd(), interface_residue_ddg(), is_interface_residue(), main(), nucleobase_probe_score_test(), utility::io::izstream.open(), utility::io::ozstream.open(), utility::io::ozstream.open_append(), numeric::kinematic_closure.operator<<(), numeric::kdtree.operator<<(), numeric::random.operator<<(), basic::resource_manager.operator<<(), numeric.operator<<(), basic::sampling::orientations.operator<<(), utility::tag.operator<<(), output_packstat_pdb(), output_results(), print_pep_csts(), register_options(), reverse_convert(), rna_sequence_recovery_metrics(), run(), ScoreFragmentSetMover.run(), run_pep_prep(), RunPepSpec(), utility.save_crash_report(), utility::tag::Tag.setOption(), setup_mask(), basic::resource_manager::locator::FileSystemResourceLocator.show(), basic::TracerToFile.TracerToFile(), fmt::internal::ArgFormatterBase< ArgFormatter< Char >, Char, FormatSpec >.visit_char(), fmt::BasicWriter< Char >.write_double(), fmt::BasicWriter< Char >.write_str(), numeric.write_tensor_to_file(), numeric.write_tensor_to_file_without_json(), basic::resource_manager.write_type< bool >(), and utility::io.write_vector().

tuple erraser_single_res_analysis.outfile = parse_options( sys.argv, 'out', 'erraser_single_res.analysis' )
int erraser_single_res_analysis.pdb_id = 0
tuple erraser_single_res_analysis.pdb_list = sorted( glob.glob( prefix + '_*.pdb') )
tuple erraser_single_res_analysis.prefix = parse_options( sys.argv, 'prefix', '' )
tuple erraser_single_res_analysis.res = parse_options( sys.argv, 'res', '' )
string erraser_single_res_analysis.score = '%9.1f'
list erraser_single_res_analysis.start_min_score = 0