Rosetta  2021.16
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apps → devel Relation

File in src/appsIncludes file in src/devel
public / AbinitioRelax.ccinit.hh
public / rna / util / analyze_base_pairing.ccinit.hh
public / interface_design / anchored_design / AnchoredDesign.ccinit.hh
public / interface_design / anchored_design / AnchoredPDBCreator.ccinit.hh
public / interface_design / anchored_design / AnchorFinder.ccinit.hh
public / antibody / antibody_CR_paratope.ccinit.hh
public / antibody / antibody_designer.ccinit.hh
public / antibody / antibody_graft.ccinit.hh
public / antibody / antibody_H3.ccinit.hh
public / antibody / antibody_legacy.ccinit.hh
public / antibody / antibody_numbering_converter.ccinit.hh
public / comparative_modeling / avrg_silent.ccinit.hh
public / backrub.ccinit.hh
public / sewing / ligand_sewing_tools / backside_hbond_finder.ccinit.hh
public / analysis / batch_distances.ccinit.hh
public / design / beta_peptide_modeling.ccinit.hh
public / stepwise / build_full_model.ccinit.hh
public / flexpep_docking / BuildPeptide.ccinit.hh
public / scenarios / ca_to_allatom.ccinit.hh
public / nmr / calc_nmr_tensor.ccinit.hh
public / calculate_sasa.ccinit.hh
public / clustering / calibur.ccinit.hh
public / ddg / cartesian_ddg.ccinit.hh
public / clustering / cluster.ccinit.hh
public / comparative_modeling / cluster_alns.ccinit.hh
public / combine_silent.ccinit.hh
public / constel.ccinit.hh
public / analysis / contactMap.ccinit.hh
public / cyclic_peptide / count_cycpep_sequences.ccinit.hh
public / coupled_moves / coupled_moves.ccinit.hh
public / design / create_clash-based_repack_shell.ccinit.hh
public / rna / util / cs_rosetta_rna.ccinit.hh
public / analysis / cst_info.ccinit.hh
public / enzdes / CstfileToTheozymePDB.ccinit.hh
public / darc / DARC.ccinit.hh
benchmark / scientific / ddg_benchmark.ccinit.hh
public / ddg / ddg_monomer.ccinit.hh
public / electron_density / denovo_density.ccinit.hh
public / electron_density / density_tools.ccinit.hh
benchmark / scientific / design_contrast_and_statistic.ccinit.hh
public / post-translational_modification / DNA_methylation.ccinit.hh
public / carbohydrates / dock_glycans.ccinit.hh
public / docking / docking_prepack_protocol.ccinit.hh
public / docking / docking_protocol.ccinit.hh
public / scenarios / doug_dock_design_min_mod2_cal_cal.ccinit.hh
public / dump_capped_residue.ccinit.hh
public / sewing / edge_file_generator.ccinit.hh
public / clustering / energy_based_clustering.ccinit.hh
public / analysis / ensemble_analysis.ccinit.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccinit.hh
public / enzdes / enzyme_design.ccinit.hh
public / rna / erraser / erraser2.ccinit.hh
public / rna / erraser / erraser_minimizer.ccinit.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccinit.hh
public / ligand_docking / extract_atomtree_diffs.ccinit.hh
public / motif_tools / extract_motifs.ccinit.hh
public / extract_pdbs.ccinit.hh
public / analysis / fast_clustering.ccinit.hh
public / comparative_modeling / fast_gap.ccinit.hh
public / fiber_diffraction / FiberDiffractionFreeSet.ccinit.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccinit.hh
public / design / fixbb.ccinit.hh
public / flexpep_docking / FlexPepDocking.ccinit.hh
public / scenarios / FloppyTail.ccinit.hh
public / fragment_picker.ccinit.hh
public / comparative_modeling / full_length_model.ccinit.hh
public / match / gen_apo_grids.ccinit.hh
public / match / gen_lig_grids.ccinit.hh
public / internal / generate_database_cache.ccinit.hh
public / sewing / ligand_sewing_tools / generate_starting_zinc_sites.ccinit.hh
public / carbohydrates / glycan_clash_check.ccinit.hh
public / carbohydrates / glycan_info.ccinit.hh
public / post-translational_modification / glycosyltransfer.ccinit.hh
public / electron_density / grower_prep.ccinit.hh
public / noncanonical_backbones / hbs_design.ccinit.hh
public / helical_bundle / helical_bundle_predict.ccinit.hh
public / membrane / helix_from_sequence.ccinit.hh
public / scenarios / beta_strand_homodimer_design / homodimer_design.ccinit.hh
public / scenarios / beta_strand_homodimer_design / homodimer_maker.ccinit.hh
public / hydrate / hydrate.ccinit.hh
public / idealize_jd2.ccinit.hh
public / antibody / identify_cdr_clusters.ccinit.hh
public / motif_tools / incorporate_motifs.ccinit.hh
benchmark / performance / init_util.hhinit.hh
public / analysis / interface_energy.ccinit.hh
public / analysis / InterfaceAnalyzer.ccinit.hh
public / comparative_modeling / iterhybrid_selector.ccinit.hh
public / ligand_docking / ligand_dock.ccinit.hh
public / ligand_docking / ligand_rpkmin.ccinit.hh
public / nmr / ligand_transform_with_pcs.ccinit.hh
public / loop_modeling / loopmodel.ccinit.hh
public / pocket / make_exemplar.ccinit.hh
public / motif_dock / make_motif_tables.ccinit.hh
public / darc / make_ray_files.ccinit.hh
public / ncaa_utilities / MakeRotLib.ccinit.hh
public / match / match.ccinit.hh
public / membrane_abinitio / membrane_abinitio2.ccinit.hh
public / sewing / ligand_sewing_tools / metal_site_finder.ccinit.hh
public / magnesium / mg_modeler.ccinit.hh
public / minimize.ccinit.hh
public / minimize_ppi.ccinit.hh
public / ddg / minimize_with_cst.ccinit.hh
public / boinc / minirosetta.ccinit.hh
public / membrane / mp_dock.ccinit.hh
public / membrane / mp_dock_setup.ccinit.hh
public / membrane / mp_domain_assembly.ccinit.hh
public / membrane / mp_lipid_acc.ccinit.hh
public / membrane / mp_mutate_relax.ccinit.hh
public / membrane / mp_range_relax.ccinit.hh
public / membrane / mp_seqrecov.ccinit.hh
public / membrane / mp_span_from_pdb.ccinit.hh
public / membrane / mp_symdock.ccinit.hh
public / membrane / mp_transform.ccinit.hh
public / membrane / mp_viewer.ccinit.hh
public / design / mpi_msd.ccinit.hh
public / electron_density / mr_protocols.ccinit.hh
public / rosetta_scripts / multistage / multistage_rosetta_scripts.ccinit.hh
public / mutate.ccinit.hh
public / post-translational_modification / N-terminal_acetylation.ccinit.hh
public / rna / util / nucleobase_sample_around.ccinit.hh
public / noncanonical_backbones / oop_design.ccinit.hh
public / weight_optimization / optE_parallel.ccinit.hh
public / antibody / packing_angle.ccinit.hh
public / packstat.ccinit.hh
public / rosetta_scripts / parse_rosetta_script.ccinit.hh
public / comparative_modeling / partial_thread.ccinit.hh
public / pepspec / pepspec.ccinit.hh
public / pepspec / pepspec_anchor_dock.ccinit.hh
public / analysis / PeptideDeriver.ccinit.hh
public / noncanonical_backbones / peptoid_design.ccinit.hh
public / analysis / per_residue_energies.ccinit.hh
public / analysis / per_residue_solvent_exposure.ccinit.hh
benchmark / performance / performance_benchmark.ccinit.hh
public / pH_protocol.ccinit.hh
public / post-translational_modification / phosphorylation.ccinit.hh
public / design / pmut_scan_parallel.ccinit.hh
public / pocket / pocket_measure.ccinit.hh
public / pocket / pocket_relax.ccinit.hh
public / pocket / pocket_suggest_target_residues_by_ddg.ccinit.hh
public / nmr / r_noe_assign.ccinit.hh
public / recces / recces.ccinit.hh
public / recces / legacy / recces_turner.ccinit.hh
public / recon_design / recon.ccinit.hh
public / relax.ccinit.hh
public / remodel.ccinit.hh
public / analysis / report_hbonds_for_plugin.ccinit.hh
public / stepwise / resample_full_model.ccinit.hh
public / analysis / residue_energy_breakdown.ccinit.hh
public / analysis / ResidueDisorder.ccinit.hh
public / restype_converter.ccinit.hh
public / rosetta_scripts / revert_design_to_native.ccinit.hh
public / rna / util / rna_cluster.ccinit.hh
public / rna / util / rna_database.ccinit.hh
public / rna / rna_denovo.ccinit.hh
public / rna / util / rna_extract.ccinit.hh
public / rna / util / rna_features.ccinit.hh
public / rna / util / rna_graft.ccinit.hh
public / rna / util / rna_helix.ccinit.hh
public / rna / util / rna_idealize.ccinit.hh
public / rna / util / rna_minimize.ccinit.hh
public / rna / util / rna_motif.ccinit.hh
public / rna / util / rna_predict_chem_map.ccinit.hh
public / rna / util / rna_score.ccinit.hh
public / rna / util / rna_suitename.ccinit.hh
public / rna / thread / rna_thread.ccinit.hh
public / rna / thread / rna_thread_and_minimize.ccinit.hh
public / rnp_ddg / rnp_ddg.ccinit.hh
public / rosetta_scripts / rosetta_scripts.ccinit.hh
public / rosettaDNA / rosettaDNA.ccinit.hh
benchmark / scientific / rotamer_recovery.ccinit.hh
public / analysis / sc.ccinit.hh
public / analysis / score.ccinit.hh
public / comparative_modeling / score_aln.ccinit.hh
public / comparative_modeling / score_aln2.ccinit.hh
public / analysis / score_jd2.ccinit.hh
public / sewing / segment_file_generator.ccinit.hh
public / ligand_docking / select_best_unique_ligand_poses.ccinit.hh
public / design / sequence_recovery.ccinit.hh
public / sequence_tolerance.ccinit.hh
public / legacy_sewing / sewing_hasher.ccinit.hh
public / analysis / shobuns.ccinit.hh
public / cyclic_peptide / simple_cycpep_predict.ccinit.hh
public / antibody / snugdock.ccinit.hh
public / comparative_modeling / spheregrinder.ccinit.hh
public / stepwise / stepwise.ccinit.hh
public / struc_set_fragment_picker.ccinit.hh
public / comparative_modeling / super_aln.ccinit.hh
public / design / supercharge.ccinit.hh
public / surface_docking / surface_docking.ccinit.hh
public / stepwise / legacy / swa_protein_main.ccinit.hh
public / stepwise / legacy / swa_rna_main.ccinit.hh
public / stepwise / legacy / swa_rna_util.ccinit.hh
public / SymDock.ccinit.hh
public / comparative_modeling / template_features.ccinit.hh
tests / test_C-terminal_conjugation.ccinit.hh
tests / test_carbohydrate_docking.ccinit.hh
tests / test_carbohydrate_scoring.ccinit.hh
tests / test_CarbohydrateInfo.ccinit.hh
tests / test_CCD_loop_closure.ccinit.hh
tests / test_coenzymes.ccinit.hh
tests / test_EnergyMethodOptions.ccinit.hh
tests / test_explicit_membrane_input.ccinit.hh
tests / test_non-canonical_connectivities.ccinit.hh
tests / test_RingConformationMover.ccinit.hh
tests / test_SiteConstraint.ccinit.hh
public / recces / legacy / thermal_sampler.ccinit.hh
public / darc / theta_ligand.ccinit.hh
public / weight_optimization / torsional_potential_corrections.ccinit.hh
public / trRosetta / trRosetta.ccinit.hh
public / scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccinit.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccinit.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccinit.hh
public / ncaa_utilities / UnfoldedStateEnergyCalculator.ccinit.hh
public / internal / validate_database.ccinit.hh
public / rosetta_scripts / validate_rosetta_script.ccinit.hh
public / comparative_modeling / validate_silent.ccinit.hh
public / vip.ccinit.hh
public / design / zinc1_homodimer_design.ccinit.hh
public / design / zinc1_homodimer_setup.ccinit.hh
public / design / zinc2_homodimer_design.ccinit.hh
public / design / zinc2_homodimer_setup.ccinit.hh
public / design / zinc_heterodimer_design.ccinit.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccinit.hh