Rosetta  2020.50
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numeric Directory Reference
Directory dependency graph for numeric:
src/numeric

Directories

directory  alignment
 
directory  coordinate_fitting
 
directory  crick_equations
 
directory  deriv
 
directory  expression_parser
 
directory  fourier
 
directory  geometry
 
directory  histograms
 
directory  internal
 
directory  interpolation
 
directory  kdtree
 
directory  kinematic_closure
 
directory  linear_algebra
 
directory  model_quality
 
directory  nls
 
directory  random
 
directory  statistics
 

Files

file  agglomerative_hierarchical_clustering.cc
 
file  agglomerative_hierarchical_clustering.hh
 hierarchical clustering utilities
 
file  all.fwd.hh
 numeric package forward declarations
 
file  angle.functions.hh
 Trigonometric functions.
 
file  AxisRotationSampler.fwd.hh
 numeric::AxisRotationSampler forward declarations
 
file  AxisRotationSampler.hh
 
file  BodyPosition.fwd.hh
 numeric::BodyPosition forward declarations
 
file  BodyPosition.hh
 Rigid body 3-D position/transform.
 
file  BodyPosition.io.hh
 BodyPosition input/output functions.
 
file  Calculator.cc
 
file  Calculator.fwd.hh
 
file  Calculator.hh
 a string-input calculator
 
file  ClusteringTreeNode.cc
 
file  ClusteringTreeNode.fwd.hh
 
file  ClusteringTreeNode.hh
 a node of a hierarchical clustering tree
 
file  color_util.cc
 
file  color_util.hh
 
file  constants.cc
 Common numeric constants in varying precisions.
 
file  constants.hh
 Common numeric constants in varying precisions.
 
file  conversions.hh
 Conversions between degrees and radians.
 
file  cubic_polynomial.cc
 Functions to evaluate cubic polynomials and cubic polynomial derivatives.
 
file  cubic_polynomial.hh
 Functions to evaluate cubic polynomials and cubic polynomial derivatives.
 
file  cyclic_coordinate_descent.cc
 Compute the angle that minimizes the deviation between a set of atoms.
 
file  cyclic_coordinate_descent.hh
 Compute the angle that minimizes the deviation between a set of atoms.
 
file  DiscreteIntervalEncodingTree.cc
 
file  DiscreteIntervalEncodingTree.hh
 definition of a discrete interval encoding tree ("DIET") as described by Martin Erwig https://web.engr.oregonstate.edu/~erwig/papers/Diet_JFP98.pdf
 
file  EulerAngles.fwd.hh
 numeric::EulerAngles forward declarations
 
file  EulerAngles.hh
 EulerAngles container derived from xyzVector.hh.
 
file  HomogeneousTransform.fwd.hh
 Fast coordinate frame container.
 
file  HomogeneousTransform.hh
 Fast coordinate frame container.
 
file  HomogeneousTransform.srlz.cc
 functions for serializing HomogeneousTransforms
 
file  HomogeneousTransform.srlz.hh
 functions for serializing xyzVector and xyzMatrix
 
file  interpolate.hh
 
file  IntervalSet.fwd.hh
 IntervalSet forward declarations.
 
file  IntervalSet.hh
 definition and implementation of IntervalSet class
 
file  io.hh
 numeric package i/o functions
 
file  IOTraits.hh
 Numerics input/output type traits.
 
file  MathMatrix.fwd.hh
 Forward header for MathMatrix.
 
file  MathMatrix.hh
 
file  MathMatrix.srlz.cc
 Serlialization routines for MathMatrix.
 
file  MathMatrix.srlz.hh
 Serlialization routines for MathMatrix.
 
file  MathMatrix_operations.hh
 
file  MathNTensor.fwd.hh
 Owning pointer declarations for MathNTensor template class.
 
file  MathNTensor.hh
 
file  MathNTensor_io.hh
 
file  MathNTensorBase.fwd.hh
 Owning pointer declarations for MathNTensorBase template class.
 
file  MathNTensorBase.hh
 
file  MathTensor.hh
 
file  MathVector.fwd.hh
 Forward header for MathVector.
 
file  MathVector.hh
 
file  MathVector.srlz.cc
 Serlialization routines for MathVectors.
 
file  MathVector.srlz.hh
 Serlialization routines for MathVector.
 
file  MathVector_operations.hh
 
file  MultiDimensionalHistogram.cc
 a class for accumulating a histogram of one or more numeric variables
 
file  MultiDimensionalHistogram.fwd.hh
 Forward declarations for class MultiDimensionalHistogram.
 
file  MultiDimensionalHistogram.hh
 a class for accumulating a histogram of one or more numeric variables
 
file  numeric.functions.hh
 Numeric functions.
 
file  NumericTraits.hh
 Numeric type traits.
 
file  PCA.hh
 
file  polynomial.cc
 Classes for polynomial evaluation functions.
 
file  polynomial.fwd.hh
 forward header for Polynomial class
 
file  polynomial.hh
 Polynomial evaluation class.
 
file  prob_util.cc
 
file  prob_util.hh
 
file  Quaternion.fwd.hh
 numeric::Quaternion forward declarations
 
file  Quaternion.hh
 Unit quaternion 3-D orientation representation.
 
file  Quaternion.io.hh
 Quaternion input/output functions.
 
file  roc_curve.cc
 
file  roc_curve.fwd.hh
 
file  roc_curve.hh
 
file  sphericalVector.fwd.hh
 numeric::sphericalVector forward declarations
 
file  sphericalVector.hh
 Fast spherical-coordinate numeric vector.
 
file  trig.functions.hh
 Trigonometric functions.
 
file  types.hh
 rosetta project type declarations. Should be kept updated with core/types.hh. This exists because numeric can't depend on files in core.
 
file  UniformRotationSampler.fwd.hh
 numeric::UniformRotationSampler forward declarations
 
file  UniformRotationSampler.hh
 
file  util.cc
 small bundle of utilities for dealing with numbers.
 
file  util.hh
 small bundle of utilities for dealing with numbers.
 
file  VoxelArray.fwd.hh
 
file  VoxelArray.hh
 N-dimensional array class to store values at float offsets.
 
file  VoxelGrid.fwd.hh
 forward declaration for class VoxelGrid
 
file  VoxelGrid.hh
 Class that provides optimal space hashing for rapid identification of neighbors.
 
file  VoxelGrid.impl.hh
 Implementation file for VoxelGrid class.
 
file  wrap_angles.hh
 Functions to wrap angles in different ranges. author Kale Kundert (kale..nosp@m.kund.nosp@m.ert@u.nosp@m.csf..nosp@m.edu)
 
file  xyz.functions.fwd.hh
 numeric::xyzVector and numeric::xyzMatrix functions forward declarations
 
file  xyz.functions.hh
 xyzVector and xyzMatrix functions
 
file  xyz.functions.PyRosetta.hh
 explicit instantiation of some numeric template functions for PyRosetta
 
file  xyz.io.hh
 xyzTriple, xyzVector, and xyzMatrix i/o functions
 
file  xyz.json.hh
 
file  xyz.serialization.cc
 functions for serializing xyzVector and xyzMatrix
 
file  xyz.serialization.hh
 functions for serializing BoundingBox and xyzMatrix
 
file  xyzMatrix.fwd.hh
 numeric::xyzMatrix forward declarations
 
file  xyzMatrix.hh
 Fast 3x3 matrix.
 
file  xyzMatrix.io.hh
 xyzMatrix input/output functions
 
file  xyzTransform.fwd.hh
 numeric::xyzTransform forward declarations
 
file  xyzTransform.hh
 Fast rigid xform 3x3 matrix + vector.
 
file  xyzTransform.io.hh
 xyzTransform input/output functions
 
file  xyzTriple.fwd.hh
 numeric::xyzTriple forward declarations
 
file  xyzTriple.hh
 Fast (x,y,z)-coordinate vector container.
 
file  xyzTriple.io.hh
 xyzTriple input/output functions
 
file  xyzVector.fwd.hh
 numeric::xyzVector forward declarations
 
file  xyzVector.hh
 Fast (x,y,z)-coordinate numeric vector.
 
file  xyzVector.io.hh
 xyzVector input/output functions
 
file  xyzVector.string.hh
 
file  zscores.cc
 
file  zscores.hh