Rosetta  2020.37
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protocols::protein_interface_design::filters::RelativeSegmentFilter Class Reference

returns the residues aligned to a segment on the input pdb to the source pdb More...

#include <RelativeSegmentFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::RelativeSegmentFilter:
Inheritance graph

Public Types

typedef core::Real Real
typedef core::Size Size

Public Member Functions

 RelativeSegmentFilter ()
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
protocols::filters::FilterOP clone () const override
protocols::filters::FilterOP fresh_instance () const override
void report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 ~RelativeSegmentFilter () override
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string source_pose () const
void source_pose (std::string const &s)
core::Size start_res () const
void start_res (core::Size const s)
core::Size stop_res () const
void stop_res (core::Size const s)
std::string name () const override
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 Filter (Filter const &)
 ~Filter () override
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real score (core::pose::Pose &pose)
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions

static std::string class_name ()
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes

std::string source_pose_
core::Size start_res_
core::Size stop_res_

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Detailed Description

returns the residues aligned to a segment on the input pdb to the source pdb

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::RelativeSegmentFilter::RelativeSegmentFilter ( )
protocols::protein_interface_design::filters::RelativeSegmentFilter::~RelativeSegmentFilter ( )

Member Function Documentation

bool protocols::protein_interface_design::filters::RelativeSegmentFilter::apply ( core::pose::Pose const &  pose) const
std::string protocols::protein_interface_design::filters::RelativeSegmentFilter::class_name ( )
protocols::filters::FilterOP protocols::protein_interface_design::filters::RelativeSegmentFilter::clone ( ) const
protocols::filters::FilterOP protocols::protein_interface_design::filters::RelativeSegmentFilter::fresh_instance ( ) const
std::string protocols::protein_interface_design::filters::RelativeSegmentFilter::name ( ) const

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References source_pose(), start_res(), stop_res(), and protocols::protein_interface_design::filters::TR().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
void protocols::protein_interface_design::filters::RelativeSegmentFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const

Reimplemented from protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::RelativeSegmentFilter::report_sm ( core::pose::Pose const &  ) const

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

std::string protocols::protein_interface_design::filters::RelativeSegmentFilter::source_pose ( ) const

References source_pose_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::source_pose ( std::string const &  s)

References source_pose_.

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::start_res ( ) const

References start_res_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::start_res ( core::Size const  s)

References start_res_.

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::stop_res ( ) const

References stop_res_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::stop_res ( core::Size const  s)

References stop_res_.

Member Data Documentation

std::string protocols::protein_interface_design::filters::RelativeSegmentFilter::source_pose_

Referenced by apply(), and source_pose().

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::start_res_

Referenced by start_res().

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::stop_res_

Referenced by stop_res().

The documentation for this class was generated from the following files: