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Ramachandran.cc File Reference

Ramachandran potential class implementation. More...

#include <core/scoring/Ramachandran.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/Energies.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ppo_torsion_bin.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/chemical/AA.hh>
#include <core/pose/Pose.hh>
#include <basic/database/open.hh>
#include <basic/options/option.hh>
#include <numeric/angle.functions.hh>
#include <numeric/interpolation/periodic_range/half/interpolation.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random.functions.hh>
#include <numeric/xyz.functions.hh>
#include <utility/VirtualBase.hh>
#include <utility/io/izstream.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/FArray2A.hh>
#include <ObjexxFCL/FArray4D.hh>
#include <ObjexxFCL/string.functions.hh>
#include <core/conformation/util.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/corrections.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <utility/vector1.hh>
#include <sstream>
#include <basic/Tracer.hh>
#include <boost/algorithm/string.hpp>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::scoring
 

Typedefs

using core::scoring::R = Ramachandran
 

Functions

static basic::Tracer TR ("core.scoring.ramachandran")
 
bool core::scoring::polymeric_termini_incomplete (conformation::Residue res)
 

Detailed Description

Ramachandran potential class implementation.

Author
Andrew Leaver-Fay (leave.nosp@m.rfa@.nosp@m.email.nosp@m..unc.nosp@m..edu)
Modified by Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) for D-amino acids, noncanonical alpha-amino acids, etc.

This class should really be rewritten from the ground up, to permit greater flexibility and to remove protein-only assumptions that limit the utility of the rama score term. This is very old, kind of ugly, not very versatile code.

Function Documentation

static basic::Tracer TR ( "core.scoring.ramachandran"  )
static