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util.hh File Reference

utility functions for interacting with VallLibrary More...

#include <core/fragment/FragData.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <utility/vector1.hh>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::fragment
 
 core::fragment::picking_old
 
 core::fragment::picking_old::vall
 

Functions

template<typename VallResidueIterator >
AnnotatedFragDataOP core::fragment::picking_old::vall::extent_to_fragdata (VallResidueIterator begin, VallResidueIterator end, BBTorsionSRFD const &srfd_type=BBTorsionSRFD())
 convert a fragment extent to a FragData instance More...
 
template<typename VallResidueIterator >
AnnotatedFragDataOP core::fragment::picking_old::vall::extent_to_fragdata (VallResidueIterator begin, VallResidueIterator end, core::Real score, BBTorsionSRFD const &srfd_type=BBTorsionSRFD())
 adds score to fragdata object More...
 
template<typename VallResidueIterator >
std::string core::fragment::picking_old::vall::extent_aa_str (VallResidueIterator begin, VallResidueIterator end)
 extract amino acid sequence from a fragment extent into a string More...
 
template<typename VallResidueIterator >
std::string core::fragment::picking_old::vall::extent_ss_str (VallResidueIterator begin, VallResidueIterator end)
 extract secondary structure from a fragment extent into a string More...
 
core::fragment::FragDataOPs core::fragment::picking_old::vall::pick_fragments_by_ss (std::string const &ss, core::Size const top_n, bool const randomize, BBTorsionSRFD const &srfd_type)
 pick fragments by default sec.struct IdentityScore More...
 
core::fragment::FragDataOPs core::fragment::picking_old::vall::pick_fragments_by_ss_plus_aa (std::string const &ss, std::string const &aa, core::Size const top_n, bool const randomize, BBTorsionSRFD const &srfd_type)
 pick fragments by default sec.struct IdentityScore More...
 
core::fragment::FragDataOPs core::fragment::picking_old::vall::pick_fragments (std::string const &ss, std::string const &aa, utility::vector1< std::string > const &abego, core::Size const top_n, bool const randomize, BBTorsionSRFD const &srfd_type)
 pick fragments by default sec.struct IdentityScore More...
 

Detailed Description

utility functions for interacting with VallLibrary

Author
Yih-En Andrew Ban (yab@u.nosp@m..was.nosp@m.hingt.nosp@m.on.e.nosp@m.du)