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protocols::fold_from_loops::movers::DisplayPoseLabelsMover Class Reference

Adds constraints generated by ConstraintGenerators to a pose. More...

#include <DisplayPoseLabelsMover.hh>

Inheritance diagram for protocols::fold_from_loops::movers::DisplayPoseLabelsMover:
Inheritance graph
[legend]

Public Member Functions

 DisplayPoseLabelsMover ()
 
 ~DisplayPoseLabelsMover () override
 
void apply (core::pose::Pose &pose) override
 Main Method. More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
 parse XML tag (to use this Mover in Rosetta Scripts) More...
 
void add_labels_as_remark (core::pose::Pose &pose) const
 
core::Size title_width () const
 
void title_width (core::Size pick)
 
bool use_dssp () const
 
void use_dssp (bool pick)
 
bool write () const
 
void write (bool pick)
 
core::select::movemap::MoveMapFactoryOP movemap_factory () const
 
void movemap_factory (core::select::movemap::MoveMapFactoryOP pick)
 
core::kinematics::MoveMapOP movemap_from_pose (core::pose::Pose const &pose) const
 
core::pack::task::TaskFactoryOP tasks () const
 
void tasks (core::pack::task::TaskFactoryOP pick)
 
protocols::moves::MoverOP fresh_instance () const override
 required in the context of the parser/scripting scheme More...
 
protocols::moves::MoverOP clone () const override
 required in the context of the parser/scripting scheme More...
 
std::string get_name () const override
 Each derived class must specify its name. The class name. More...
 
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
 
virtual MoverOP create ()
 
MoverCOP get_self_ptr () const
 
MoverOP get_self_ptr ()
 
MoverCAP get_self_weak_ptr () const
 
MoverAP get_self_weak_ptr ()
 
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
 
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
 
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
 
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
 
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
 
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
 
void set_type (std::string const &setting)
 Set the 'type' string. More...
 
std::string get_type () const
 
void type (const std::string &type_in)
 Set the 'type' string. More...
 
std::string const & type () const
 Get the set 'type' string. More...
 
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
 
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
 
PoseCOP get_input_pose () const
 
PoseCOP get_native_pose () const
 
void set_current_job (protocols::jobdist::BasicJobCOP job)
 
jobdist::BasicJobCOP get_current_job () const
 
virtual void set_current_tag (std::string const &new_tag)
 
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
 
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...
 
virtual core::Real last_proposal_density_ratio ()
 
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
 
virtual Stringsinfo ()
 non-const accessor More...
 
virtual Strings const & info () const
 const accessor More...
 
virtual bool mover_provides_citation_info () const
 Does this mover provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool mover_is_unpublished () const
 Does this mover indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string mover_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
 
static void register_options ()
 Overload this static method if you access options within the mover. More...
 

Private Member Functions

std::map< std::string,
std::string > 
find_labels (core::pose::Pose const &pose) const
 
std::map< std::string,
utility::vector1< core::Size > > 
find_labels2 (core::pose::Pose const &pose) const
 
void print_data (std::string id, std::string content, bool force)
 
void print_movemap (core::pose::Pose const &pose)
 
void print_task_operators (core::pose::Pose const &pose)
 
void simple_visualize_fold_tree (core::kinematics::FoldTree const &fold_tree, std::ostream &out)
 
bool is_nubinitio_tree (core::kinematics::FoldTree const &fold_tree)
 

Static Private Member Functions

static core::Size default_title_width ()
 
static bool default_use_dssp ()
 
static bool default_write ()
 

Private Attributes

core::Size title_width_
 
bool use_dssp_
 
core::select::movemap::MoveMapFactoryOP movemap_factory_
 
core::pack::task::TaskFactoryOP tasks_
 
bool write_
 

Additional Inherited Members

- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
 
typedef core::pose::Pose Pose
 
typedef core::pose::PoseCOP PoseCOP
 
typedef std::list< std::string > Strings
 
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
 

Detailed Description

Adds constraints generated by ConstraintGenerators to a pose.

Constructor & Destructor Documentation

protocols::fold_from_loops::movers::DisplayPoseLabelsMover::DisplayPoseLabelsMover ( )
protocols::fold_from_loops::movers::DisplayPoseLabelsMover::~DisplayPoseLabelsMover ( )
overridedefault

Member Function Documentation

void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::add_labels_as_remark ( core::pose::Pose pose) const
void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::apply ( core::pose::Pose )
overridevirtual
protocols::moves::MoverOP protocols::fold_from_loops::movers::DisplayPoseLabelsMover::clone ( ) const
overridevirtual

required in the context of the parser/scripting scheme

Reimplemented from protocols::moves::Mover.

static core::Size protocols::fold_from_loops::movers::DisplayPoseLabelsMover::default_title_width ( )
inlinestaticprivate

Referenced by parse_my_tag(), and provide_xml_schema().

static bool protocols::fold_from_loops::movers::DisplayPoseLabelsMover::default_use_dssp ( )
inlinestaticprivate

Referenced by parse_my_tag(), and provide_xml_schema().

static bool protocols::fold_from_loops::movers::DisplayPoseLabelsMover::default_write ( )
inlinestaticprivate

Referenced by parse_my_tag(), and provide_xml_schema().

std::map< std::string, std::string > protocols::fold_from_loops::movers::DisplayPoseLabelsMover::find_labels ( core::pose::Pose const &  pose) const
private
std::map< std::string, utility::vector1< core::Size > > protocols::fold_from_loops::movers::DisplayPoseLabelsMover::find_labels2 ( core::pose::Pose const &  pose) const
private
protocols::moves::MoverOP protocols::fold_from_loops::movers::DisplayPoseLabelsMover::fresh_instance ( ) const
overridevirtual

required in the context of the parser/scripting scheme

Reimplemented from protocols::moves::Mover.

std::string protocols::fold_from_loops::movers::DisplayPoseLabelsMover::get_name ( ) const
overridevirtual

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

References mover_name().

bool protocols::fold_from_loops::movers::DisplayPoseLabelsMover::is_nubinitio_tree ( core::kinematics::FoldTree const &  fold_tree)
private
core::select::movemap::MoveMapFactoryOP protocols::fold_from_loops::movers::DisplayPoseLabelsMover::movemap_factory ( ) const
inline

References movemap_factory_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::movemap_factory ( core::select::movemap::MoveMapFactoryOP  pick)
inline

References movemap_factory_.

core::kinematics::MoveMapOP protocols::fold_from_loops::movers::DisplayPoseLabelsMover::movemap_from_pose ( core::pose::Pose const &  pose) const
inline

References movemap_factory_.

Referenced by print_movemap().

std::string protocols::fold_from_loops::movers::DisplayPoseLabelsMover::mover_name ( )
static
void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  data 
)
overridevirtual
void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::print_data ( std::string  id,
std::string  content,
bool  force 
)
private
void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::print_movemap ( core::pose::Pose const &  pose)
private
void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::print_task_operators ( core::pose::Pose const &  pose)
private
void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::simple_visualize_fold_tree ( core::kinematics::FoldTree const &  fold_tree,
std::ostream &  out 
)
private
core::pack::task::TaskFactoryOP protocols::fold_from_loops::movers::DisplayPoseLabelsMover::tasks ( ) const
inline

References tasks_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::tasks ( core::pack::task::TaskFactoryOP  pick)
inline

References tasks_.

core::Size protocols::fold_from_loops::movers::DisplayPoseLabelsMover::title_width ( ) const
inline

References title_width_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::title_width ( core::Size  pick)
inline

References title_width_.

bool protocols::fold_from_loops::movers::DisplayPoseLabelsMover::use_dssp ( ) const
inline

References use_dssp_.

Referenced by parse_my_tag().

void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::use_dssp ( bool  pick)
inline

References use_dssp_.

bool protocols::fold_from_loops::movers::DisplayPoseLabelsMover::write ( ) const
inline
void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::write ( bool  pick)
inline

References write_.

Member Data Documentation

core::select::movemap::MoveMapFactoryOP protocols::fold_from_loops::movers::DisplayPoseLabelsMover::movemap_factory_
private
core::pack::task::TaskFactoryOP protocols::fold_from_loops::movers::DisplayPoseLabelsMover::tasks_
private

Referenced by apply(), print_task_operators(), and tasks().

core::Size protocols::fold_from_loops::movers::DisplayPoseLabelsMover::title_width_
private

Referenced by print_data(), and title_width().

bool protocols::fold_from_loops::movers::DisplayPoseLabelsMover::use_dssp_
private

Referenced by apply(), and use_dssp().

bool protocols::fold_from_loops::movers::DisplayPoseLabelsMover::write_
private

Referenced by apply(), and write().


The documentation for this class was generated from the following files: