Adds constraints generated by ConstraintGenerators to a pose. More...
#include <DisplayPoseLabelsMover.hh>
Public Member Functions | |
| DisplayPoseLabelsMover () | |
| ~DisplayPoseLabelsMover () override | |
| void | apply (core::pose::Pose &pose) override |
| Main Method. More... | |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override |
| parse XML tag (to use this Mover in Rosetta Scripts) More... | |
| void | add_labels_as_remark (core::pose::Pose &pose) const |
| core::Size | title_width () const |
| void | title_width (core::Size pick) |
| bool | use_dssp () const |
| void | use_dssp (bool pick) |
| bool | write () const |
| void | write (bool pick) |
| core::select::movemap::MoveMapFactoryOP | movemap_factory () const |
| void | movemap_factory (core::select::movemap::MoveMapFactoryOP pick) |
| core::kinematics::MoveMapOP | movemap_from_pose (core::pose::Pose const &pose) const |
| core::pack::task::TaskFactoryOP | tasks () const |
| void | tasks (core::pack::task::TaskFactoryOP pick) |
| protocols::moves::MoverOP | fresh_instance () const override |
| required in the context of the parser/scripting scheme More... | |
| protocols::moves::MoverOP | clone () const override |
| required in the context of the parser/scripting scheme More... | |
| std::string | get_name () const override |
| Each derived class must specify its name. The class name. More... | |
 Public Member Functions inherited from protocols::moves::Mover | |
| Mover () | |
| virtual MoverOP | create () |
| MoverCOP | get_self_ptr () const |
| MoverOP | get_self_ptr () |
| MoverCAP | get_self_weak_ptr () const |
| MoverAP | get_self_weak_ptr () |
| Mover (std::string const &type_name) | |
| sets the type for a mover; name_ has been removed (2010/05/14) More... | |
| virtual void | test_move (Pose &pose) |
| : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More... | |
| virtual bool | reinitialize_for_each_job () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More... | |
| virtual bool | reinitialize_for_new_input () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More... | |
| MoverStatus | get_last_move_status () const |
| end parser interface, start Job Distributor interface///////////// More... | |
| void | reset_status () |
| resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More... | |
| virtual core::pose::PoseOP | get_additional_output () |
| Mechanism by which a mover may return multiple output poses from a single input pose. More... | |
| void | set_type (std::string const &setting) |
| Set the 'type' string. More... | |
| std::string | get_type () const |
| void | type (const std::string &type_in) |
| Set the 'type' string. More... | |
| std::string const & | type () const |
| Get the set 'type' string. More... | |
| virtual void | set_input_pose (PoseCOP pose) |
| setter for poses contained for rms More... | |
| virtual void | set_native_pose (PoseCOP pose) |
| setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More... | |
| PoseCOP | get_input_pose () const |
| PoseCOP | get_native_pose () const |
| void | set_current_job (protocols::jobdist::BasicJobCOP job) |
| jobdist::BasicJobCOP | get_current_job () const |
| virtual void | set_current_tag (std::string const &new_tag) |
| std::string | get_current_tag () const |
| A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More... | |
| virtual void | show (std::ostream &output=std::cout) const |
| Outputs details about the Mover, including current settings. More... | |
| virtual core::Real | last_proposal_density_ratio () |
| virtual void | clear_info () |
| Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More... | |
| virtual Strings & | info () |
| non-const accessor More... | |
| virtual Strings const & | info () const |
| const accessor More... | |
| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Static Public Member Functions | |
| static std::string | mover_name () |
| static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
| Static Public Member Functions inherited from protocols::moves::Mover | |
| static std::string | name () |
| static void | register_options () |
| Overload this static method if you access options within the mover. More... | |
Private Member Functions | |
| std::map< std::string, std::string > | find_labels (core::pose::Pose const &pose) const |
| std::map< std::string, utility::vector1< core::Size > > | find_labels2 (core::pose::Pose const &pose) const |
| void | print_data (std::string id, std::string content, bool force) |
| void | print_movemap (core::pose::Pose const &pose) |
| void | print_task_operators (core::pose::Pose const &pose) |
| void | simple_visualize_fold_tree (core::kinematics::FoldTree const &fold_tree, std::ostream &out) |
| bool | is_nubinitio_tree (core::kinematics::FoldTree const &fold_tree) |
Static Private Member Functions | |
| static core::Size | default_title_width () |
| static bool | default_use_dssp () |
| static bool | default_write () |
Private Attributes | |
| core::Size | title_width_ |
| bool | use_dssp_ |
| core::select::movemap::MoveMapFactoryOP | movemap_factory_ |
| core::pack::task::TaskFactoryOP | tasks_ |
| bool | write_ |
Additional Inherited Members | |
| Public Types inherited from protocols::moves::Mover | |
| typedef utility::tag::TagCOP | TagCOP |
| typedef core::pose::Pose | Pose |
| typedef core::pose::PoseCOP | PoseCOP |
| typedef std::list< std::string > | Strings |
| Protected Member Functions inherited from protocols::moves::Mover | |
| void | set_last_move_status (MoverStatus status) |
| nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More... | |
Detailed Description
Adds constraints generated by ConstraintGenerators to a pose.
Constructor & Destructor Documentation
◆ DisplayPoseLabelsMover()
| protocols::fold_from_loops::movers::DisplayPoseLabelsMover::DisplayPoseLabelsMover | ( | ) |
◆ ~DisplayPoseLabelsMover()
|
overridedefault |
Member Function Documentation
◆ add_labels_as_remark()
| void protocols::fold_from_loops::movers::DisplayPoseLabelsMover::add_labels_as_remark | ( | core::pose::Pose & | pose | ) | const |
References core::pose::add_comment(), core::sequence::end, and find_labels2().
Referenced by apply().
◆ apply()
|
overridevirtual |
Main Method.
Implements protocols::moves::Mover.
References add_labels_as_remark(), core::pose::Pose::annotated_sequence(), protocols::simple_filters::dssp(), find_labels(), core::pose::Pose::fold_tree(), core::sequence::left, movemap_factory_, core::pose::Pose::pdb_info(), print_data(), print_movemap(), print_task_operators(), core::select::residue_selector::represent_residue_selector(), core::pose::Pose::secstruct(), core::pose::Pose::sequence(), simple_visualize_fold_tree(), tasks_, protocols::fold_from_loops::movers::TR(), use_dssp_, and write_.
Referenced by protocols::fold_from_loops::movers::NubInitioLoopClosureMover::apply(), protocols::fold_from_loops::NubInitioMover::dump_centroid(), protocols::fold_from_loops::NubInitioMover::post_process(), and protocols::fold_from_loops::NubInitioMover::refold_pose().
◆ clone()
|
overridevirtual |
required in the context of the parser/scripting scheme
Reimplemented from protocols::moves::Mover.
◆ default_title_width()
|
inlinestaticprivate |
Referenced by parse_my_tag(), and provide_xml_schema().
◆ default_use_dssp()
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inlinestaticprivate |
Referenced by parse_my_tag(), and provide_xml_schema().
◆ default_write()
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inlinestaticprivate |
Referenced by parse_my_tag(), and provide_xml_schema().
◆ find_labels()
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private |
References core::select::residue_selector::ResiduePDBInfoHasLabelSelector::apply(), core::pose::Pose::pdb_info(), core::select::residue_selector::represent_residue_selector(), core::select::residue_selector::ResiduePDBInfoHasLabelSelector::set_label(), and core::pose::Pose::size().
Referenced by apply().
◆ find_labels2()
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private |
References core::select::residue_selector::ResiduePDBInfoHasLabelSelector::apply(), core::pose::Pose::pdb_info(), core::select::residue_selector::selection_positions(), core::select::residue_selector::ResiduePDBInfoHasLabelSelector::set_label(), and core::pose::Pose::size().
Referenced by add_labels_as_remark().
◆ fresh_instance()
|
overridevirtual |
required in the context of the parser/scripting scheme
Reimplemented from protocols::moves::Mover.
◆ get_name()
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overridevirtual |
Each derived class must specify its name. The class name.
Implements protocols::moves::Mover.
References mover_name().
◆ is_nubinitio_tree()
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private |
References core::kinematics::FoldTree::get_jump_edges().
Referenced by simple_visualize_fold_tree().
◆ movemap_factory() [1/2]
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inline |
References movemap_factory_.
Referenced by parse_my_tag(), and protocols::fold_from_loops::NubInitioMover::refold_pose().
◆ movemap_factory() [2/2]
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inline |
References movemap_factory_.
◆ movemap_from_pose()
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inline |
References movemap_factory_.
Referenced by print_movemap().
◆ mover_name()
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static |
◆ parse_my_tag()
|
overridevirtual |
parse XML tag (to use this Mover in Rosetta Scripts)
Reimplemented from protocols::moves::Mover.
References default_title_width(), default_use_dssp(), default_write(), movemap_factory(), core::select::movemap::parse_movemap_factory(), core::pack::task::parse_task_operations(), tasks(), title_width(), use_dssp(), and write().
◆ print_data()
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private |
References core::sequence::left, title_width_, and protocols::fold_from_loops::movers::TR().
Referenced by apply(), print_movemap(), and print_task_operators().
◆ print_movemap()
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private |
References movemap_from_pose(), print_data(), and core::pose::Pose::size().
Referenced by apply().
◆ print_task_operators()
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private |
References print_data(), core::select::residue_selector::represent_residue_selector(), and tasks_.
Referenced by apply().
◆ provide_xml_schema()
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static |
References core::select::movemap::attributes_for_parse_movemap_factory(), core::pack::task::attributes_for_parse_task_operations_w_factory(), default_title_width(), default_use_dssp(), default_write(), mover_name(), core::id::to_string(), and protocols::moves::xsd_type_definition_w_attributes().
Referenced by protocols::fold_from_loops::movers::DisplayPoseLabelsMoverCreator::provide_xml_schema().
◆ simple_visualize_fold_tree()
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private |
References core::kinematics::FoldTree::is_cutpoint(), core::kinematics::FoldTree::is_jump_point(), is_nubinitio_tree(), core::kinematics::FoldTree::is_root(), core::kinematics::FoldTree::jump_edge(), core::kinematics::FoldTree::nres(), core::kinematics::FoldTree::num_jump(), core::conformation::membrane::out, core::kinematics::simple_visualize_fold_tree(), core::kinematics::Edge::start(), and core::kinematics::Edge::stop().
Referenced by apply().
◆ tasks() [1/2]
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inline |
References tasks_.
Referenced by parse_my_tag().
◆ tasks() [2/2]
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inline |
References tasks_.
◆ title_width() [1/2]
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inline |
References title_width_.
Referenced by parse_my_tag().
◆ title_width() [2/2]
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inline |
References title_width_.
◆ use_dssp() [1/2]
|
inline |
References use_dssp_.
Referenced by parse_my_tag().
◆ use_dssp() [2/2]
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inline |
References use_dssp_.
◆ write() [1/2]
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inline |
◆ write() [2/2]
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inline |
References write_.
Member Data Documentation
◆ movemap_factory_
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private |
Referenced by apply(), movemap_factory(), and movemap_from_pose().
◆ tasks_
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private |
Referenced by apply(), print_task_operators(), and tasks().
◆ title_width_
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private |
Referenced by print_data(), and title_width().
◆ use_dssp_
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private |
Referenced by apply(), and use_dssp().
◆ write_
|
private |
The documentation for this class was generated from the following files:
- src/protocols/fold_from_loops/movers/DisplayPoseLabelsMover.hh
- src/protocols/fold_from_loops/movers/DisplayPoseLabelsMover.cc
