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protocols::simple_filters::TaskAwareScoreTypeFilter Class Reference

#include <TaskAwareScoreTypeFilter.hh>

Inheritance diagram for protocols::simple_filters::TaskAwareScoreTypeFilter:
Inheritance graph
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Public Member Functions

 TaskAwareScoreTypeFilter ()
 default ctor More...
 
bool apply (core::pose::Pose const &pose) const override
 Constructor with a single target residue. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
core::Real compute (core::pose::Pose const &pose, bool const &write) const
 
 ~TaskAwareScoreTypeFilter () override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
core::pack::task::TaskFactoryOP task_factory () const
 
core::scoring::ScoreFunctionOP scorefxn () const
 
core::scoring::ScoreType score_type () const
 
core::Real threshold () const
 
bool bb_bb () const
 
void task_factory (core::pack::task::TaskFactoryOP task_factory)
 
void scorefxn (core::scoring::ScoreFunctionOP scorefxn)
 
void score_type (core::scoring::ScoreType const st)
 
std::string score_type_name () const
 
void score_type_name (std::string const &name)
 
void threshold (core::Real const thresh)
 
void bb_bb (bool const bb)
 
bool unbound () const
 
void unbound (bool const unbound)
 
std::string sym_dof_names () const
 
void sym_dof_names (std::string const &sym_dofs)
 
core::Size jump () const
 
void jump (core::Size const jump)
 
std::string mode () const
 
void mode (std::string const &mode)
 
void write2pdb (bool const write)
 
bool write2pdb () const
 
void write_to_pdb (core::pose::Pose const &pose, core::Size const residue, std::string const &residue_name, core::Real const score) const
 
bool individual_hbonds () const
 
void individual_hbonds (bool const individual_hbonds)
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Types

typedef protocols::filters::Filter parent
 

Private Attributes

core::pack::task::TaskFactoryOP task_factory_
 
core::scoring::ScoreFunctionOP scorefxn_
 
core::scoring::ScoreType score_type_
 
std::string score_type_name_
 
core::Real threshold_
 
bool bb_bb_
 
bool unbound_
 
bool write2pdb_
 
bool individual_hbonds_
 
std::string sym_dof_names_
 
core::Size jump_
 
std::string mode_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::simple_filters::TaskAwareScoreTypeFilter::TaskAwareScoreTypeFilter ( )

default ctor

protocols::simple_filters::TaskAwareScoreTypeFilter::~TaskAwareScoreTypeFilter ( )
overridedefault

Member Function Documentation

bool protocols::simple_filters::TaskAwareScoreTypeFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), mode(), protocols::filters::Filter::score(), threshold_, and protocols::simple_filters::TR().

bool protocols::simple_filters::TaskAwareScoreTypeFilter::bb_bb ( ) const

References bb_bb_.

Referenced by parse_my_tag().

void protocols::simple_filters::TaskAwareScoreTypeFilter::bb_bb ( bool const  bb)

References bb_bb_.

std::string protocols::simple_filters::TaskAwareScoreTypeFilter::class_name ( )
static
protocols::filters::FilterOP protocols::simple_filters::TaskAwareScoreTypeFilter::clone ( ) const
overridevirtual
core::Real protocols::simple_filters::TaskAwareScoreTypeFilter::compute ( core::pose::Pose const &  pose,
bool const &  write 
) const
protocols::filters::FilterOP protocols::simple_filters::TaskAwareScoreTypeFilter::fresh_instance ( ) const
overridevirtual
bool protocols::simple_filters::TaskAwareScoreTypeFilter::individual_hbonds ( ) const

References individual_hbonds_.

Referenced by individual_hbonds(), and parse_my_tag().

void protocols::simple_filters::TaskAwareScoreTypeFilter::individual_hbonds ( bool const  individual_hbonds)
core::Size protocols::simple_filters::TaskAwareScoreTypeFilter::jump ( ) const

References jump_.

Referenced by compute(), jump(), and parse_my_tag().

void protocols::simple_filters::TaskAwareScoreTypeFilter::jump ( core::Size const  jump)

References jump(), and jump_.

std::string protocols::simple_filters::TaskAwareScoreTypeFilter::mode ( ) const

References mode_.

Referenced by apply(), compute(), mode(), and parse_my_tag().

void protocols::simple_filters::TaskAwareScoreTypeFilter::mode ( std::string const &  mode)

References mode(), and mode_.

std::string protocols::simple_filters::TaskAwareScoreTypeFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

Referenced by score_type_name(), and write_to_pdb().

void protocols::simple_filters::TaskAwareScoreTypeFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual
void protocols::simple_filters::TaskAwareScoreTypeFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::simple_filters::TaskAwareScoreTypeFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and write2pdb_.

core::Real protocols::simple_filters::TaskAwareScoreTypeFilter::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and protocols::filters::Filter::score().

core::scoring::ScoreType protocols::simple_filters::TaskAwareScoreTypeFilter::score_type ( ) const

References score_type_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::TaskAwareScoreTypeFilter::score_type ( core::scoring::ScoreType const  st)

References score_type_.

std::string protocols::simple_filters::TaskAwareScoreTypeFilter::score_type_name ( ) const

References score_type_name_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::TaskAwareScoreTypeFilter::score_type_name ( std::string const &  name)

References name(), and score_type_name_.

core::scoring::ScoreFunctionOP protocols::simple_filters::TaskAwareScoreTypeFilter::scorefxn ( ) const

References scorefxn_.

Referenced by compute(), parse_my_tag(), and scorefxn().

void protocols::simple_filters::TaskAwareScoreTypeFilter::scorefxn ( core::scoring::ScoreFunctionOP  scorefxn)

References scorefxn(), and scorefxn_.

std::string protocols::simple_filters::TaskAwareScoreTypeFilter::sym_dof_names ( ) const

References sym_dof_names_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::TaskAwareScoreTypeFilter::sym_dof_names ( std::string const &  sym_dofs)

References sym_dof_names_.

core::pack::task::TaskFactoryOP protocols::simple_filters::TaskAwareScoreTypeFilter::task_factory ( ) const

References task_factory_.

Referenced by compute(), parse_my_tag(), and task_factory().

void protocols::simple_filters::TaskAwareScoreTypeFilter::task_factory ( core::pack::task::TaskFactoryOP  task_factory)

References task_factory(), and task_factory_.

core::Real protocols::simple_filters::TaskAwareScoreTypeFilter::threshold ( ) const

References threshold_.

Referenced by compute(), and parse_my_tag().

void protocols::simple_filters::TaskAwareScoreTypeFilter::threshold ( core::Real const  thresh)

References threshold_.

bool protocols::simple_filters::TaskAwareScoreTypeFilter::unbound ( ) const

References unbound_.

Referenced by compute(), parse_my_tag(), and unbound().

void protocols::simple_filters::TaskAwareScoreTypeFilter::unbound ( bool const  unbound)

References unbound(), and unbound_.

void protocols::simple_filters::TaskAwareScoreTypeFilter::write2pdb ( bool const  write)

References write2pdb_.

bool protocols::simple_filters::TaskAwareScoreTypeFilter::write2pdb ( ) const

References write2pdb_.

Referenced by parse_my_tag().

void protocols::simple_filters::TaskAwareScoreTypeFilter::write_to_pdb ( core::pose::Pose const &  pose,
core::Size const  residue,
std::string const &  residue_name,
core::Real const  score 
) const

Member Data Documentation

bool protocols::simple_filters::TaskAwareScoreTypeFilter::bb_bb_
private

Referenced by bb_bb().

bool protocols::simple_filters::TaskAwareScoreTypeFilter::individual_hbonds_
private

Referenced by compute(), and individual_hbonds().

core::Size protocols::simple_filters::TaskAwareScoreTypeFilter::jump_
private

Referenced by jump().

std::string protocols::simple_filters::TaskAwareScoreTypeFilter::mode_
private

Referenced by mode().

core::scoring::ScoreType protocols::simple_filters::TaskAwareScoreTypeFilter::score_type_
private

Referenced by score_type().

std::string protocols::simple_filters::TaskAwareScoreTypeFilter::score_type_name_
private

Referenced by score_type_name().

core::scoring::ScoreFunctionOP protocols::simple_filters::TaskAwareScoreTypeFilter::scorefxn_
private

Referenced by scorefxn().

std::string protocols::simple_filters::TaskAwareScoreTypeFilter::sym_dof_names_
private

Referenced by sym_dof_names().

core::pack::task::TaskFactoryOP protocols::simple_filters::TaskAwareScoreTypeFilter::task_factory_
private

Referenced by task_factory().

core::Real protocols::simple_filters::TaskAwareScoreTypeFilter::threshold_
private

Referenced by apply(), and threshold().

bool protocols::simple_filters::TaskAwareScoreTypeFilter::unbound_
private

Referenced by unbound().

bool protocols::simple_filters::TaskAwareScoreTypeFilter::write2pdb_
private

Referenced by report(), and write2pdb().


The documentation for this class was generated from the following files: