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protocols::moves::SequenceMover Class Reference

A Mover that iterates through a vector of Movers, applying each one sequentially. More...

#include <MoverContainer.hh>

Inheritance diagram for protocols::moves::SequenceMover:
Inheritance graph
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Public Member Functions

 SequenceMover (bool ms=false)
 Constructs a SequenceMover, optionally setting to use mover status. seqmover = SequenceMover() More...
 
 SequenceMover (MoverOP mover1, MoverOP mover2)
 Convenience constructor: initial sequence of 2 movers seqmover = SequenceMover( mover1 , mover2 ) More...
 
 SequenceMover (MoverOP mover1, MoverOP mover2, MoverOP mover3)
 Convenience constructor: initial sequence of 3 movers seqmover = SequenceMover( mover1 , mover2 , mover3 ) More...
 
 SequenceMover (SequenceMover const &)
 Copy constructor – performs a deep copy of all contained movers. Invoked by clone() More...
 
MoverOP clone () const override
 deep copy of all contained movers. More...
 
MoverOP fresh_instance () const override
 Generates a new Mover object freshly created with the default ctor. More...
 
void use_mover_status (bool const flag)
 MoverStatus of the mover will be evaluated after each mover. More...
 
bool use_mover_status ()
 
void apply (core::pose::Pose &pose) override
 Applies a series of movers sequentially on a Pose. More...
 
std::string get_name () const override
 Each derived class must specify its name. The class name. More...
 
- Public Member Functions inherited from protocols::moves::MoverContainer
 MoverContainer ()
 
 MoverContainer (MoverContainer const &source)
 to be called by derived-class clone() methods; copy all data from the source MoverContainer More...
 
void add_mover (MoverOP mover_in, core::Real weight_in=1.0)
 Adds a mover to the end of this container. More...
 
std::string get_mover (core::Size index) const
 
void clear ()
 
void set_input_pose (PoseCOP pose) override
 Sets the input Pose for both the container and the contained movers, for rmsd. More...
 
void set_native_pose (PoseCOP pose) override
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
 
void set_current_tag (std::string const &new_tag) override
 
core::Size nr_moves ()
 
core::Size size () const
 
MoverOP front ()
 
utility::vector0< core::Real >
const & 
weights () const
 
utility::vector0< MoverOP > const & movers () const
 
utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const override
 Provide the citations for the movers contained in this MoverContainer. More...
 
utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const override
 Provide a list of authors for the movers contained in this MoverContainer. More...
 
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
 
virtual MoverOP create ()
 
MoverCOP get_self_ptr () const
 
MoverOP get_self_ptr ()
 
MoverCAP get_self_weak_ptr () const
 
MoverAP get_self_weak_ptr ()
 
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
 
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
 
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
 
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
 
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
 
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
 
void set_type (std::string const &setting)
 Set the 'type' string. More...
 
std::string get_type () const
 
void type (const std::string &type_in)
 Set the 'type' string. More...
 
std::string const & type () const
 Get the set 'type' string. More...
 
PoseCOP get_input_pose () const
 
PoseCOP get_native_pose () const
 
virtual void parse_my_tag (TagCOP tag, basic::datacache::DataMap &data)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
 
void set_current_job (protocols::jobdist::BasicJobCOP job)
 
jobdist::BasicJobCOP get_current_job () const
 
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
 
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...
 
virtual core::Real last_proposal_density_ratio ()
 
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
 
virtual Stringsinfo ()
 non-const accessor More...
 
virtual Strings const & info () const
 const accessor More...
 
virtual bool mover_provides_citation_info () const
 Does this mover provide information about how to cite it? More...
 
virtual bool mover_is_unpublished () const
 Does this mover indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 

Private Attributes

bool use_mover_status_
 use mover status ( default false ) More...
 

Additional Inherited Members

- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
 
typedef core::pose::Pose Pose
 
typedef core::pose::PoseCOP PoseCOP
 
typedef std::list< std::string > Strings
 
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
 
static void register_options ()
 Overload this static method if you access options within the mover. More...
 
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
 
- Protected Attributes inherited from protocols::moves::MoverContainer
utility::vector0< core::Realweight_
 relative weight when part of MoverContainer. More...
 
utility::vector0< MoverOPmovers_
 

Detailed Description

A Mover that iterates through a vector of Movers, applying each one sequentially.

Common Methods: SequenceMover.add_mover SequenceMover.apply

Constructor & Destructor Documentation

protocols::moves::SequenceMover::SequenceMover ( bool  ms = false)

Constructs a SequenceMover, optionally setting to use mover status. seqmover = SequenceMover()

Constructs a SequenceMover seqmover = SequenceMover()

protocols::moves::SequenceMover::SequenceMover ( MoverOP  mover1,
MoverOP  mover2 
)

Convenience constructor: initial sequence of 2 movers seqmover = SequenceMover( mover1 , mover2 )

Mover mover1 /first mover to apply with SequenceMover.apply Mover mover2 /second mover to apply with SequenceMover.apply

References protocols::moves::MoverContainer::add_mover().

protocols::moves::SequenceMover::SequenceMover ( MoverOP  mover1,
MoverOP  mover2,
MoverOP  mover3 
)

Convenience constructor: initial sequence of 3 movers seqmover = SequenceMover( mover1 , mover2 , mover3 )

Mover mover1 /first mover to apply with SequenceMover.apply Mover mover2 /second mover to apply with SequenceMover.apply Mover mover3 /third mover to apply with SequenceMover.apply

References protocols::moves::MoverContainer::add_mover().

protocols::moves::SequenceMover::SequenceMover ( SequenceMover const &  )
default

Copy constructor – performs a deep copy of all contained movers. Invoked by clone()

Member Function Documentation

void protocols::moves::SequenceMover::apply ( core::pose::Pose pose)
overridevirtual
MoverOP protocols::moves::SequenceMover::clone ( ) const
overridevirtual

deep copy of all contained movers.

Reimplemented from protocols::moves::Mover.

MoverOP protocols::moves::SequenceMover::fresh_instance ( ) const
overridevirtual

Generates a new Mover object freshly created with the default ctor.

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Reimplemented from protocols::moves::Mover.

std::string protocols::moves::SequenceMover::get_name ( ) const
overridevirtual

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

void protocols::moves::SequenceMover::use_mover_status ( bool const  flag)
inline

MoverStatus of the mover will be evaluated after each mover.

References use_mover_status_.

bool protocols::moves::SequenceMover::use_mover_status ( )
inline

References use_mover_status_.

Member Data Documentation

bool protocols::moves::SequenceMover::use_mover_status_
private

use mover status ( default false )

Referenced by apply(), and use_mover_status().


The documentation for this class was generated from the following files: