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protocols::cluster Namespace Reference

Namespaces

 calibur
 

Classes

class  APCluster
 Public interface for doing affinity propagation clustering. More...
 
class  AssignToClustersMover
 
struct  Cluster
 
class  ClusterBase
 
class  ClusterPhilStyle
 
class  ClusterPhilStyle_Loop
 
class  ClusterPhilStyle_PoseReporter
 
class  DataPoint
 Data structure for one input data point for affinity propagation clustering. More...
 
class  EnsembleConstraints
 
class  EnsembleConstraints_Simple
 
class  Exemplar
 Data structure for one similarity measurement (s_ik) for affinity propagation clustering. More...
 
class  GatherPosesMover
 

Typedefs

typedef
utility::pointer::shared_ptr
< APCluster
APClusterOP
 
typedef
utility::pointer::shared_ptr
< APCluster const > 
APClusterCOP
 
typedef
utility::pointer::shared_ptr
< GatherPosesMover
GatherPosesMoverOP
 
typedef
utility::pointer::shared_ptr
< GatherPosesMover const > 
GatherPosesMoverCOP
 
typedef
utility::pointer::shared_ptr
< EnsembleConstraints
EnsembleConstraintsOP
 
typedef
utility::pointer::shared_ptr
< EnsembleConstraints const > 
EnsembleConstraintsCOP
 
typedef
utility::pointer::shared_ptr
< EnsembleConstraints_Simple
EnsembleConstraints_SimpleOP
 
typedef
utility::pointer::shared_ptr
< EnsembleConstraints_Simple
const > 
EnsembleConstraints_SimpleCOP
 
typedef
utility::pointer::shared_ptr
< ClusterBase
ClusterBaseOP
 
typedef
utility::pointer::shared_ptr
< ClusterBase const > 
ClusterBaseCOP
 
typedef
utility::pointer::shared_ptr
< ClusterPhilStyle
ClusterPhilStyleOP
 
typedef
utility::pointer::shared_ptr
< ClusterPhilStyle const > 
ClusterPhilStyleCOP
 
typedef
utility::pointer::shared_ptr
< AssignToClustersMover
AssignToClustersMoverOP
 
typedef
utility::pointer::shared_ptr
< AssignToClustersMover const > 
AssignToClustersMoverCOP
 

Functions

template<typename T >
void write1 (FILE *f, T t)
 
template<typename T >
void read1 (FILE *f, T &t)
 
static basic::Tracer tr ("protocols.cluster")
 
std::map< std::string, core::Realread_template_scores (const std::string &filename)
 
bool compareIndexEnergyPair (const std::pair< int, Real > &p1, const std::pair< int, Real > &p2)
 

Typedef Documentation

typedef utility::pointer::shared_ptr< APCluster const > protocols::cluster::APClusterCOP
typedef utility::pointer::shared_ptr< APCluster > protocols::cluster::APClusterOP
typedef utility::pointer::shared_ptr< AssignToClustersMover const > protocols::cluster::AssignToClustersMoverCOP
typedef utility::pointer::shared_ptr< AssignToClustersMover > protocols::cluster::AssignToClustersMoverOP
typedef utility::pointer::shared_ptr< ClusterBase const > protocols::cluster::ClusterBaseCOP
typedef utility::pointer::shared_ptr< ClusterBase > protocols::cluster::ClusterBaseOP
typedef utility::pointer::shared_ptr< ClusterPhilStyle const > protocols::cluster::ClusterPhilStyleCOP
typedef utility::pointer::shared_ptr< ClusterPhilStyle > protocols::cluster::ClusterPhilStyleOP
typedef utility::pointer::shared_ptr< EnsembleConstraints const > protocols::cluster::EnsembleConstraintsCOP
typedef utility::pointer::shared_ptr< EnsembleConstraints > protocols::cluster::EnsembleConstraintsOP
typedef utility::pointer::shared_ptr< GatherPosesMover const > protocols::cluster::GatherPosesMoverCOP
typedef utility::pointer::shared_ptr< GatherPosesMover > protocols::cluster::GatherPosesMoverOP

Function Documentation

bool protocols::cluster::compareIndexEnergyPair ( const std::pair< int, Real > &  p1,
const std::pair< int, Real > &  p2 
)
template<typename T >
void protocols::cluster::read1 ( FILE *  f,
T &  t 
)
inline
std::map< std::string, core::Real > protocols::cluster::read_template_scores ( const std::string &  filename)
static basic::Tracer protocols::cluster::tr ( "protocols.cluster"  )
static
template<typename T >
void protocols::cluster::write1 ( FILE *  f,
t 
)
inline