Rosetta  2020.46
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core::simple_metrics::metrics::SequenceSimilarityMetric Member List

This is the complete list of members for core::simple_metrics::metrics::SequenceSimilarityMetric, including all inherited members.

apply(std::string const &out_label, pose::Pose &pose, bool override_existing_data=false) const overridecore::simple_metrics::RealMetricvirtual
core::simple_metrics::SimpleMetric::apply(pose::Pose &pose, std::string const &prefix="", std::string const &suffix="", bool override_existing_data=false) const core::simple_metrics::SimpleMetric
apply_selector_to_native_core::simple_metrics::metrics::SequenceSimilarityMetricprivate
cached_calculate(pose::Pose const &pose, bool use_cache, std::string prefix="", std::string suffix="", bool fail_on_missing_cache=true) const core::simple_metrics::RealMetric
calculate(pose::Pose const &pose) const overridecore::simple_metrics::metrics::SequenceSimilarityMetricvirtual
clone() const overridecore::simple_metrics::metrics::SequenceSimilarityMetricvirtual
complex_type_generator_for_simple_metric(utility::tag::XMLSchemaDefinition &)core::simple_metrics::SimpleMetricstatic
get_custom_type() const core::simple_metrics::SimpleMetric
get_final_sm_type() const core::simple_metrics::SimpleMetric
get_metric_names() const overridecore::simple_metrics::RealMetricvirtual
metric() const overridecore::simple_metrics::metrics::SequenceSimilarityMetricvirtual
name() const overridecore::simple_metrics::metrics::SequenceSimilarityMetricvirtual
name_static()core::simple_metrics::metrics::SequenceSimilarityMetricstatic
native_pose_core::simple_metrics::metrics::SequenceSimilarityMetricmutableprivate
normalize_core::simple_metrics::metrics::SequenceSimilarityMetricprivate
operator=(RealMetric const &)core::simple_metrics::RealMetric
core::simple_metrics::SimpleMetric::operator=(SimpleMetric const &)core::simple_metrics::SimpleMetric
parse_base_tag(utility::tag::TagCOP tag)core::simple_metrics::SimpleMetricvirtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) overridecore::simple_metrics::metrics::SequenceSimilarityMetricvirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const overridecore::simple_metrics::metrics::SequenceSimilarityMetricvirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)core::simple_metrics::metrics::SequenceSimilarityMetricstatic
RealMetric()core::simple_metrics::RealMetric
RealMetric(RealMetric const &other)core::simple_metrics::RealMetric
score(std::string const &seq1, std::string const &seq2, bool normalize)core::simple_metrics::metrics::SequenceSimilarityMetricstatic
selector_core::simple_metrics::metrics::SequenceSimilarityMetricprivate
SequenceSimilarityMetric()core::simple_metrics::metrics::SequenceSimilarityMetric
SequenceSimilarityMetric(select::residue_selector::ResidueSelectorCOP selector)core::simple_metrics::metrics::SequenceSimilarityMetric
SequenceSimilarityMetric(SequenceSimilarityMetric const &src)core::simple_metrics::metrics::SequenceSimilarityMetric
set_apply_selector_to_native(bool setting)core::simple_metrics::metrics::SequenceSimilarityMetricinline
set_custom_type(std::string const &custom_type)core::simple_metrics::SimpleMetric
set_native_pose(core::pose::PoseCOP setting)core::simple_metrics::metrics::SequenceSimilarityMetricinline
set_native_pose(core::pose::PoseCOP setting, bool apply_selector_to_native)core::simple_metrics::metrics::SequenceSimilarityMetricinline
set_normalize(bool setting)core::simple_metrics::metrics::SequenceSimilarityMetricinline
set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector)core::simple_metrics::metrics::SequenceSimilarityMetricinline
set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector, bool apply_selector_to_native)core::simple_metrics::metrics::SequenceSimilarityMetricinline
simple_metric_type() const core::simple_metrics::SimpleMetricinline
SimpleMetric(std::string const &simple_metric_type)core::simple_metrics::SimpleMetric
SimpleMetric(SimpleMetric const &other)core::simple_metrics::SimpleMetric
~RealMetric() overridecore::simple_metrics::RealMetric
~SequenceSimilarityMetric() overridecore::simple_metrics::metrics::SequenceSimilarityMetric
~SimpleMetric() overridecore::simple_metrics::SimpleMetric