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ScoreFunctionFactory.hh File Reference
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <utility/vector1.hh>
#include <utility/options/OptionCollection.fwd.hh>
#include <utility/options/keys/OptionKeyList.fwd.hh>
#include <string>

Classes

class  core::scoring::ScoreFunctionFactory
 A collection of functions for making a single score_function. More...
 

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::scoring
 

Functions

core::scoring::ScoreFunctionOP core::scoring::get_score_function (bool const is_fullatom=true)
 A helper function which returns a scoring function held in an owning pointer according to the user's command line parameters -score:weights and -score:patch By default it returns weights=talaris2013 for fullatom, and weights=cen_std and patch="" for centroid. More...
 
core::scoring::ScoreFunctionOP core::scoring::get_score_function (core::pose::Pose const &pose, bool const is_fullatom=true)
 Get a ScoreFunction from cmd-line settings and dependant on the symmetrical state of the pose. More...
 
core::scoring::ScoreFunctionOP core::scoring::get_score_function (core::pose::Pose const &pose, utility::options::OptionCollection const &options, bool const is_fullatom=true)
 Get a ScoreFunction from cmd-line settings and dependant on the symmetrical state of the pose. Local Options collection. More...
 
core::scoring::ScoreFunctionOP core::scoring::get_score_function (utility::options::OptionCollection const &options, bool const is_fullatom=true)
 A helper function which creates a scoring function held in an owning pointer reading from the input OptionCollection. More...
 
void core::scoring::list_read_options_in_get_score_function (utility::options::OptionKeyList &opts)
 A documentation function which reports the set of options read by get_score_function. More...
 
core::scoring::ScoreFunctionOP core::scoring::get_score_function_legacy (std::string const &pre_talaris_2013_weight_set, std::string const &pre_talaris_2013_patch_file="")
 A helper function that either returns a ScoreFunctionOP created by get_score_function() or the one specified by the protocol which is activated by the -restore_pre_talaris_2013_behavior flag. The purpose of this function is to preserve legacy behavior for the sake of reproducibility and so that a record of the old behavior is still preserved in the code to ease the process of reverting the change to get_score_function if that were the wrong behavior. More...
 
core::scoring::ScoreFunctionOP core::scoring::get_score_function_legacy (utility::options::OptionCollection const &options, std::string const &pre_talaris_2013_weight_set, std::string const &pre_talaris_2013_patch_file)
 
void core::scoring::list_read_options_in_get_score_function_legacy (utility::options::OptionKeyList &opts)
 A documentation function which reports the set of options read by get_score_function_legacy. More...
 
std::string core::scoring::get_score_functionName (bool const is_fullatom=true)
 use the logic of get_score_function to get the name. The name format is <weights_tag>[_<patch_tag> ... ] More...
 
std::string core::scoring::get_current_default_score_function_name ()
 
std::string core::scoring::basename_for_score_function (std::string const &sfxn_name)
 returns family name for a specific score function. For example, ref2015_cart returns ref2015 and beta_nov16_cst returns beta_nov16 Returns an empty string if no match is found More...
 
void core::scoring::apply_set_weights (ScoreFunctionOP scorefxn, utility::vector1< std::string > const &settings)
 

Variables

std::string const core::scoring::REF_2015
 
std::string const core::scoring::TALARIS_2014
 
std::string const core::scoring::TALARIS_2013
 
std::string const core::scoring::TALARIS_2013_CART
 
std::string const core::scoring::PRE_TALARIS_2013_STANDARD_WTS
 
std::string const core::scoring::SCORE13
 
std::string const core::scoring::CENTROID_WTS
 
std::string const core::scoring::SOFT_REP_WTS
 
std::string const core::scoring::SOFT_REP_DESIGN_WTS
 
std::string const core::scoring::DNA_INT_WTS
 
std::string const core::scoring::DNA_INT_WTS_GB
 
std::string const core::scoring::MM_STD_WTS
 
std::string const core::scoring::RNA_LORES_WTS
 
std::string const core::scoring::RNA_HIRES_WTS
 
std::string const core::scoring::RNA_LORES_PLUS_HIRES_WTS
 
std::string const core::scoring::MEMB_HIGHRES_WTS
 
std::string const core::scoring::SCORE12_PATCH
 
std::string const core::scoring::DOCK_PATCH
 
std::string const core::scoring::DOCK_LOW_PATCH
 
std::string const core::scoring::SCORE4_SMOOTH_CART
 
std::string const core::scoring::BETA_GENPOT
 
std::string const core::scoring::BETA_NOV16
 
std::string const core::scoring::BETA_NOV15
 
std::string const core::scoring::BETA_JULY15