Rosetta
core::energy_methods::FaMPEnvSmoothEnergy Member List

This is the complete list of members for core::energy_methods::FaMPEnvSmoothEnergy, including all inherited members.

atomic_interaction_cutoff() constcore::energy_methods::FaMPEnvSmoothEnergy
atomistic_energy(core::Size atmno, conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
atomistic_pair_energy(core::Size atmno1, conformation::Residue const &rsd1, core::Size atomno2, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
atoms_with_dof_derivatives(conformation::Residue const &res, pose::Pose const &pose) constcore::scoring::methods::OneBodyEnergyvirtual
calc_energy(core::conformation::Residue const &rsd, core::pose::Pose const &pose, core::Real const neighbor_count, core::chemical::AA const aa, core::Real &score, core::Real &dscore_dneighbor_count) constcore::energy_methods::FaMPEnvSmoothEnergyprivate
clone() const overridecore::energy_methods::FaMPEnvSmoothEnergyvirtual
ContextDependentOneBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::ContextDependentOneBodyEnergy
defines_dof_derivatives(pose::Pose const &p) constcore::scoring::methods::OneBodyEnergyvirtual
defines_high_order_terms(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
defines_score_for_residue(conformation::Residue const &) constcore::scoring::methods::OneBodyEnergyvirtual
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
eval_atom_derivative(core::id::AtomID const &atom_id, core::pose::Pose const &pose, core::kinematics::DomainMap const &, core::scoring::ScoreFunction const &, core::scoring::EnergyMap const &weights, core::Vector &F1, core::Vector &F2) const overridecore::energy_methods::FaMPEnvSmoothEnergy
core::scoring::methods::ContextDependentOneBodyEnergy::eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) constcore::scoring::methods::EnergyMethodvirtual
eval_residue_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) constcore::scoring::methods::OneBodyEnergyvirtual
eval_residue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) constcore::scoring::methods::OneBodyEnergyvirtual
FaMPEnvSmoothEnergy()core::energy_methods::FaMPEnvSmoothEnergy
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) constcore::scoring::methods::EnergyMethodvirtual
finalize_after_minimizing(pose::Pose &pose) constcore::scoring::methods::EnergyMethodvirtual
finalize_total_energy(pose::Pose &pose, ScoreFunction const &sfxn, EnergyMap &total_energy) constcore::scoring::methods::EnergyMethodvirtual
has_atomistic_energies() constcore::scoring::methods::EnergyMethodvirtual
has_atomistic_pairwise_energies() constcore::scoring::methods::EnergyMethodvirtual
increment_f1_f2_for_atom_pair(core::conformation::Atom const &atom1, core::conformation::Atom const &atom2, core::Real weighted_dScore_dN, core::Vector &F1, core::Vector &F2) constcore::energy_methods::FaMPEnvSmoothEnergyprivate
indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const overridecore::energy_methods::FaMPEnvSmoothEnergyvirtual
mem_env_log10_core::energy_methods::FaMPEnvSmoothEnergyprivate
method_type() const overridecore::scoring::methods::ContextDependentOneBodyEnergyvirtual
minimize_in_whole_structure_context(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
OneBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::OneBodyEnergy
parent typedefcore::energy_methods::FaMPEnvSmoothEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) constcore::scoring::methods::EnergyMethodvirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) constcore::scoring::methods::EnergyMethodvirtual
representative_atom_name(core::chemical::AA const aa) constcore::energy_methods::FaMPEnvSmoothEnergyprivate
requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) constcore::scoring::methods::OneBodyEnergyvirtual
requires_a_setup_for_scoring_for_residue_opportunity_during_minimization(pose::Pose const &pose) constcore::scoring::methods::OneBodyEnergyvirtual
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) constcore::scoring::methods::EnergyMethodvirtual
residue_dEdN_core::energy_methods::FaMPEnvSmoothEnergymutableprivate
residue_E_core::energy_methods::FaMPEnvSmoothEnergymutableprivate
residue_energy(core::conformation::Residue const &rsd, core::pose::Pose const &, core::scoring::EnergyMap &) const overridecore::energy_methods::FaMPEnvSmoothEnergyvirtual
residue_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap &emap) constcore::scoring::methods::OneBodyEnergyvirtual
residue_N_core::energy_methods::FaMPEnvSmoothEnergymutableprivate
score_types() constcore::scoring::methods::EnergyMethodinline
score_types_core::scoring::methods::EnergyMethodprivate
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
setup_for_derivatives(core::pose::Pose &pose, core::scoring::ScoreFunction const &sf) const overridecore::energy_methods::FaMPEnvSmoothEnergyvirtual
setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data, basic::datacache::BasicDataCache &res_data_cache) constcore::scoring::methods::OneBodyEnergyvirtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &, ScoreFunction const &, kinematics::MinimizerMapBase const &, basic::datacache::BasicDataCache &, ResSingleMinimizationData &) constcore::scoring::methods::OneBodyEnergyvirtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_scoring(core::pose::Pose &pose, core::scoring::ScoreFunction const &) const overridecore::energy_methods::FaMPEnvSmoothEnergyvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) constcore::scoring::methods::OneBodyEnergyvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) constcore::scoring::methods::OneBodyEnergy
core::scoring::methods::EnergyMethod::setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) constcore::scoring::methods::EnergyMethodvirtual
show_additional_info(std::ostream &, pose::Pose &, bool) constcore::scoring::methods::EnergyMethodvirtual
sigmoidish_neighbor(DistanceSquared const sqdist) constcore::energy_methods::FaMPEnvSmoothEnergyprivate
update_residue_for_packing(pose::Pose &, Size resid) constcore::scoring::methods::EnergyMethodvirtual
use_extended_residue_energy_interface() constcore::scoring::methods::OneBodyEnergyvirtual
version() const overridecore::energy_methods::FaMPEnvSmoothEnergyprivatevirtual
~OneBodyEnergy() overridecore::scoring::methods::OneBodyEnergy