#include <SSMotifFinderFilter.hh>
◆ SSMotifFinder()
protocols::simple_filters::SSMotifFinder::SSMotifFinder |
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◆ ~SSMotifFinder()
protocols::simple_filters::SSMotifFinder::~SSMotifFinder |
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overridedefault |
◆ apply()
bool protocols::simple_filters::SSMotifFinder::apply |
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core::pose::Pose const & |
pose | ) |
const |
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overridevirtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References core::pose::Pose::conformation(), core::scoring::dssp::Dssp::dssp_reduced(), filename_, from_res(), core::scoring::dssp::Dssp::get_dssp_secstruct(), core::conformation::Residue::is_protein(), core::scoring::pair, pdbname_, protocols::simple_filters::res_rmsd(), core::conformation::Conformation::residue(), rmsd(), core::pose::Pose::size(), superimpose_pose_on_template(), template_pose_, template_stem1(), template_stem2(), to_res(), protocols::simple_filters::TR(), and protocols::simple_filters::write_to_file().
◆ class_name()
std::string protocols::simple_filters::SSMotifFinder::class_name |
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◆ clone()
◆ compute_jump()
◆ filename() [1/2]
std::string protocols::simple_filters::SSMotifFinder::filename |
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const |
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inline |
◆ filename() [2/2]
void protocols::simple_filters::SSMotifFinder::filename |
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std::string const |
s | ) |
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inline |
◆ fresh_instance()
◆ from_res() [1/2]
core::Size protocols::simple_filters::SSMotifFinder::from_res |
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const |
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inline |
◆ from_res() [2/2]
void protocols::simple_filters::SSMotifFinder::from_res |
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core::Size const |
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inline |
◆ jump()
◆ name()
std::string protocols::simple_filters::SSMotifFinder::name |
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const |
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overridevirtual |
◆ parse_my_tag()
Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.
Reimplemented from protocols::filters::Filter.
References compute_jump(), filename(), from_res(), jump_, core::pose::parse_resnum(), core::import_pose::PDB_file, pdbname(), core::import_pose::pose_from_file(), rmsd(), template_pose_, template_stem1(), template_stem2(), to_res(), and protocols::simple_filters::TR().
◆ pdbname() [1/2]
std::string protocols::simple_filters::SSMotifFinder::pdbname |
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const |
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inline |
◆ pdbname() [2/2]
void protocols::simple_filters::SSMotifFinder::pdbname |
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std::string const |
s | ) |
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inline |
◆ provide_xml_schema()
void protocols::simple_filters::SSMotifFinder::provide_xml_schema |
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utility::tag::XMLSchemaDefinition & |
xsd | ) |
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static |
◆ report()
void protocols::simple_filters::SSMotifFinder::report |
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std::ostream & |
out, |
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core::pose::Pose const & |
pose |
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) |
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overridevirtual |
◆ report_sm()
◆ rmsd() [1/2]
core::Real protocols::simple_filters::SSMotifFinder::rmsd |
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const |
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inline |
◆ rmsd() [2/2]
void protocols::simple_filters::SSMotifFinder::rmsd |
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core::Real const |
c | ) |
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inline |
◆ superimpose_pose_on_template()
◆ template_stem1() [1/2]
core::Size protocols::simple_filters::SSMotifFinder::template_stem1 |
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const |
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inline |
◆ template_stem1() [2/2]
void protocols::simple_filters::SSMotifFinder::template_stem1 |
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core::Size const |
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inline |
◆ template_stem2() [1/2]
core::Size protocols::simple_filters::SSMotifFinder::template_stem2 |
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const |
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inline |
◆ template_stem2() [2/2]
void protocols::simple_filters::SSMotifFinder::template_stem2 |
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core::Size const |
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inline |
◆ to_res() [1/2]
core::Size protocols::simple_filters::SSMotifFinder::to_res |
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const |
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inline |
◆ to_res() [2/2]
void protocols::simple_filters::SSMotifFinder::to_res |
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core::Size const |
r | ) |
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inline |
◆ filename_
std::string protocols::simple_filters::SSMotifFinder::filename_ |
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private |
◆ from_res_
core::Size protocols::simple_filters::SSMotifFinder::from_res_ |
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private |
◆ jump_
◆ pdbname_
std::string protocols::simple_filters::SSMotifFinder::pdbname_ |
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private |
◆ rmsd_
core::Real protocols::simple_filters::SSMotifFinder::rmsd_ |
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private |
◆ template_pose_
◆ template_stem1_
core::Size protocols::simple_filters::SSMotifFinder::template_stem1_ |
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private |
◆ template_stem2_
core::Size protocols::simple_filters::SSMotifFinder::template_stem2_ |
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private |
◆ to_res_
core::Size protocols::simple_filters::SSMotifFinder::to_res_ |
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private |
The documentation for this class was generated from the following files: