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util.cc File Reference

utilities for fldsgn/topology More...

#include <protocols/fldsgn/topology/util.hh>
#include <protocols/fldsgn/topology/StrandPairing.hh>
#include <protocols/fldsgn/topology/SS_Info2.hh>
#include <protocols/forge/build/Interval.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/dssp/StrandPairing.hh>
#include <core/id/AtomID_Map.hh>
#include <core/scoring/EnergiesCacheableDataType.hh>
#include <core/scoring/sasa.hh>
#include <utility/exit.hh>
#include <utility/assert.hh>
#include <iostream>
#include <sstream>
#include <basic/Tracer.hh>
#include <map>
#include <numeric/conversions.hh>
#include <utility/vector1.hh>
#include <core/pose/util.tmpl.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::fldsgn
 
 protocols::fldsgn::topology
 

Typedefs

using String = std::string
 
using VecSize = utility::vector1< core::Size >
 

Functions

static basic::Tracer TR ("protocols.topology.util")
 
protocols::fldsgn::topology::StrandPairingSet protocols::fldsgn::topology::calc_strand_pairing_set (core::pose::Pose const &pose, protocols::fldsgn::topology::SS_Info2_COP const ssinfo, core::Size minimum_pair_length)
 convert StrandParingSet of dssp to fldsgn::topology::StrandPairingSet More...
 
core::Real protocols::fldsgn::topology::calc_delta_sasa (core::pose::Pose const &pose, utility::vector1< protocols::forge::build::Interval > intervals, Real const pore_radius)
 calc delta sasa, when a molecule is splited to 2parts. More...
 
core::Size protocols::fldsgn::topology::check_kink_helix (core::pose::Pose const &pose, core::Size const begin, core::Size const end)
 check kink of helix, return number of loosen hydrogen More...
 
utility::vector1
< core::scoring::hbonds::HBond
protocols::fldsgn::topology::check_internal_hbonds (core::pose::Pose const &pose, core::Size const begin, core::Size const end)
 check kink of helix, return number of loosen hydrogen More...
 
core::Real protocols::fldsgn::topology::calc_strand_helix_angle (core::pose::Pose const &pose, protocols::fldsgn::topology::SS_Info2_COP const ssinfo, core::Size const strand_id1, core::Size const strand_id2, core::Size const helix_id, std::string const &geom_type)
 

Detailed Description

utilities for fldsgn/topology

Author
Nobuyasu Koga ( nobuy.nosp@m.asu@.nosp@m.u.was.nosp@m.hing.nosp@m.ton.e.nosp@m.du )

Typedef Documentation

using String = std::string
using VecSize = utility::vector1<core::Size>

Function Documentation

static basic::Tracer TR ( "protocols.topology.util"  )
static