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protocols::dna::DesignProteinBackboneAroundDNA Member List

This is the complete list of members for protocols::dna::DesignProteinBackboneAroundDNA, including all inherited members.

AnnealableGraphBaseCOP typedefprotocols::minimization_packing::PackRotamersMover
AnnealableGraphBaseOP typedefprotocols::minimization_packing::PackRotamersMover
apply(Pose &) overrideprotocols::dna::DesignProteinBackboneAroundDNAvirtual
backrub(Pose &, loops::LoopsOP const, TaskFactoryCOP)protocols::dna::DesignProteinBackboneAroundDNAprivate
ccd(Pose &, loops::LoopsOP const, TaskFactoryCOP)protocols::dna::DesignProteinBackboneAroundDNAprivate
cleanup(core::pose::Pose &pose)protocols::minimization_packing::PackRotamersMoverprotectedvirtual
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::dna::DesignProteinBackboneAroundDNAvirtual
complex_type_generator_for_pack_rotamers_mover(utility::tag::XMLSchemaDefinition &xsd)protocols::minimization_packing::PackRotamersMoverstatic
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
cycles_inner_protocols::dna::DesignProteinBackboneAroundDNAprivate
cycles_outer_protocols::dna::DesignProteinBackboneAroundDNAprivate
designable_second_shell_protocols::dna::DesignProteinBackboneAroundDNAprivate
DesignProteinBackboneAroundDNA()protocols::dna::DesignProteinBackboneAroundDNA
DesignProteinBackboneAroundDNA(std::string const &, ScoreFunctionCOP)protocols::dna::DesignProteinBackboneAroundDNA
fresh_instance() const overrideprotocols::dna::DesignProteinBackboneAroundDNAvirtual
gapspan_protocols::dna::DesignProteinBackboneAroundDNAprivate
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::dna::DesignProteinBackboneAroundDNAvirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
ig_protocols::minimization_packing::PackRotamersMoverprivate
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
initialize_from_options(utility::options::OptionCollection const &options)protocols::minimization_packing::PackRotamersMoverprivate
initialize_task_factory_with_operations(std::list< core::pack::task::operation::TaskOperationCOP > const &)protocols::minimization_packing::PackRotamersMover
input_pose_protocols::moves::Moverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
list_options_read(utility::options::OptionKeyList &opts)protocols::minimization_packing::PackRotamersMoverstatic
Loops typedefprotocols::dna::DesignProteinBackboneAroundDNA
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::dna::DesignProteinBackboneAroundDNAstatic
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
nloop(core::Size nloop_in)protocols::minimization_packing::PackRotamersMover
nloop() constprotocols::minimization_packing::PackRotamersMoverinline
nloop_protocols::minimization_packing::PackRotamersMoverprivate
note_packertask_settings(Pose const &)protocols::minimization_packing::PackRotamersMoverprotectedvirtual
observer_protocols::minimization_packing::PackRotamersMoverprivate
PackerTaskCOP typedefprotocols::minimization_packing::PackRotamersMover
PackRotamersMover()protocols::minimization_packing::PackRotamersMover
PackRotamersMover(utility::options::OptionCollection const &options)protocols::minimization_packing::PackRotamersMover
PackRotamersMover(std::string const &)protocols::minimization_packing::PackRotamersMover
PackRotamersMover(ScoreFunctionCOP scorefxn, PackerTaskCOP task=nullptr, core::Size nloop=1)protocols::minimization_packing::PackRotamersMover
PackRotamersMover(PackRotamersMover const &other)protocols::minimization_packing::PackRotamersMover
parse_my_tag(TagCOP, basic::datacache::DataMap &) overrideprotocols::dna::DesignProteinBackboneAroundDNAvirtual
parse_score_function(TagCOP, basic::datacache::DataMap const &)protocols::minimization_packing::PackRotamersMovervirtual
parse_task_operations(TagCOP, basic::datacache::DataMap const &)protocols::minimization_packing::PackRotamersMovervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::dna::DesignProteinBackboneAroundDNAstatic
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
repack_rate_protocols::dna::DesignProteinBackboneAroundDNAprivate
reset_status()protocols::moves::Mover
rotamer_sets() constprotocols::minimization_packing::PackRotamersMover
rotamer_sets_protocols::minimization_packing::PackRotamersMoverprivate
RotamerSetsCOP typedefprotocols::minimization_packing::PackRotamersMover
RotamerSetsOP typedefprotocols::minimization_packing::PackRotamersMover
run(Pose &pose, utility::vector0< int > rot_to_pack=utility::vector0< int >()) constprotocols::minimization_packing::PackRotamersMoverprotectedvirtual
score_function(ScoreFunctionCOP sf)protocols::minimization_packing::PackRotamersMover
score_function() constprotocols::minimization_packing::PackRotamersMover
ScoreFunctionCOP typedefprotocols::minimization_packing::PackRotamersMover
scorefxn_protocols::minimization_packing::PackRotamersMoverprivate
set_annealer_observer(core::pack::annealer::AnnealerObserverOP observer)protocols::minimization_packing::PackRotamersMoverinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_loop_info(Pose const &, Loops const &)protocols::dna::DesignProteinBackboneAroundDNAprivate
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
setup(Pose &pose)protocols::minimization_packing::PackRotamersMoverprotectedvirtual
show(std::ostream &output=std::cout) const overrideprotocols::minimization_packing::PackRotamersMovervirtual
spread_protocols::dna::DesignProteinBackboneAroundDNAprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
targeted_dna(DnaDesignDefOPs const &)protocols::dna::DesignProteinBackboneAroundDNA
targeted_dna() constprotocols::dna::DesignProteinBackboneAroundDNA
targeted_dna_protocols::dna::DesignProteinBackboneAroundDNAprivate
task(PackerTaskCOP t)protocols::minimization_packing::PackRotamersMover
task() constprotocols::minimization_packing::PackRotamersMover
task_protocols::minimization_packing::PackRotamersMoverprivate
task_factory(TaskFactoryCOP tf)protocols::minimization_packing::PackRotamersMovervirtual
task_factory() constprotocols::minimization_packing::PackRotamersMover
task_factory_protocols::minimization_packing::PackRotamersMoverprivate
task_is_valid(Pose const &pose) constprotocols::minimization_packing::PackRotamersMover
TaskFactoryCOP typedefprotocols::minimization_packing::PackRotamersMover
temp_final_protocols::dna::DesignProteinBackboneAroundDNAprivate
temp_initial_protocols::dna::DesignProteinBackboneAroundDNAprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::dna::DesignProteinBackboneAroundDNAprivate
~DesignProteinBackboneAroundDNA() overrideprotocols::dna::DesignProteinBackboneAroundDNA
~PackRotamersMover() overrideprotocols::minimization_packing::PackRotamersMover