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Public Member Functions | Protected Attributes | List of all members
protocols::simple_filters::AbinitioBaseFilter Class Referenceabstract

#include <AbinitioBaseFilter.hh>

Inheritance diagram for protocols::simple_filters::AbinitioBaseFilter:
Inheritance graph
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Public Member Functions

 AbinitioBaseFilter ()
 c-tor and d-tor More...
 
 ~AbinitioBaseFilter () override=default
 
filters::FilterOP clone () const override=0
 
filters::FilterOP fresh_instance () const override=0
 
bool apply (core::pose::Pose const &pose) const override=0
 Returns true if the given pose passes the filter, false otherwise. More...
 
std::string get_protein_sstype (core::pose::Pose const &pose) const
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual void report (std::ostream &, core::pose::Pose const &) const
 
virtual core::Real report_sm (core::pose::Pose const &) const
 used to report filter internals through a score or silent file More...
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual void parse_my_tag (utility::tag::TagCOP, basic::datacache::DataMap &)
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Protected Attributes

int max_helix_length_
 
core::Real max_helix_fraction_
 
int beta_
 
float beta_ratio_
 
std::string sstype_
 
- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::AbinitioBaseFilter::AbinitioBaseFilter ( )

c-tor and d-tor

protocols::simple_filters::AbinitioBaseFilter::~AbinitioBaseFilter ( )
overridedefault

Member Function Documentation

bool protocols::simple_filters::AbinitioBaseFilter::apply ( core::pose::Pose const &  pose) const
overridepure virtual
filters::FilterOP protocols::simple_filters::AbinitioBaseFilter::clone ( ) const
overridepure virtual
filters::FilterOP protocols::simple_filters::AbinitioBaseFilter::fresh_instance ( ) const
overridepure virtual
std::string protocols::simple_filters::AbinitioBaseFilter::get_protein_sstype ( core::pose::Pose const &  pose) const
std::string protocols::simple_filters::AbinitioBaseFilter::name ( ) const
inlineoverridevirtual

Member Data Documentation

int protocols::simple_filters::AbinitioBaseFilter::beta_
mutableprotected
float protocols::simple_filters::AbinitioBaseFilter::beta_ratio_
mutableprotected
core::Real protocols::simple_filters::AbinitioBaseFilter::max_helix_fraction_
mutableprotected
int protocols::simple_filters::AbinitioBaseFilter::max_helix_length_
mutableprotected
std::string protocols::simple_filters::AbinitioBaseFilter::sstype_
mutableprotected

The documentation for this class was generated from the following files: