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protocols::jd3::pose_outputters Namespace Reference

Classes

class  DeNovoSilentFilePoseOutputter
 The DeNovoSilentFilePoseOutputter. More...
 
class  DeNovoSilentFilePoseOutputterCreator
 
class  mmTFPoseOutputSpecification
 The mmTFPoseOutputSpecification giving all of the details of how to write a Pose out to disk in PDB format. More...
 
class  mmTFPoseOutputter
 The mmTFPoseOutputter. More...
 
class  mmTFPoseOutputterCreator
 
class  PDBPoseOutputSpecification
 The PDBPoseOutputSpecification giving all of the details of how to write a Pose out to disk in PDB format. More...
 
class  PDBPoseOutputter
 The PDBPoseOutputter. More...
 
class  PDBPoseOutputterCreator
 
class  PoseOutputSpecification
 The PoseOutputSpecification. More...
 
class  PoseOutputter
 The PoseOutputter. More...
 
class  PoseOutputterCreator
 
class  PoseOutputterFactory
 
class  PoseOutputterRegistrator
 This templated class will register an instance of an PoseOutputterCreator (class T) with the PoseOutputterFactory. It will ensure that no PoseOutputterCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
 
class  ScoreFileOutputSpecification
 The ScoreFileOutputSpecification giving all of the details of how to write a Pose out to disk in PDB format. More...
 
class  ScoreFileOutputter
 The ScoreFileOutputter. More...
 
class  ScoreFileOutputterCreator
 
class  SecondaryPoseOutputter
 The SecondaryPoseOutputter. More...
 
class  SecondaryPoseOutputterCreator
 
class  SecondaryPoseOutputterRegistrator
 This templated class will register an instance of an SecondaryPoseOutputterCreator (class T) with the PoseOutputterFactory. It will ensure that no SecondaryPoseOutputterCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
 
class  SilentFilePoseOutputSpecification
 The SilentFilePoseOutputSpecification giving all of the details of how to write a Pose out to disk as a silent file. More...
 
class  SilentFilePoseOutputter
 The SilentFilePoseOutputter. More...
 
class  SilentFilePoseOutputterCreator
 

Typedefs

typedef
utility::pointer::shared_ptr
< DeNovoSilentFilePoseOutputter
DeNovoSilentFilePoseOutputterOP
 
typedef
utility::pointer::shared_ptr
< DeNovoSilentFilePoseOutputter
const > 
DeNovoSilentFilePoseOutputterCOP
 
typedef
utility::pointer::shared_ptr
< mmTFPoseOutputSpecification
mmTFPoseOutputSpecificationOP
 
typedef
utility::pointer::shared_ptr
< mmTFPoseOutputSpecification
const > 
mmTFPoseOutputSpecificationCOP
 
typedef
utility::pointer::shared_ptr
< mmTFPoseOutputter
mmTFPoseOutputterOP
 
typedef
utility::pointer::shared_ptr
< mmTFPoseOutputter const > 
mmTFPoseOutputterCOP
 
typedef
utility::pointer::shared_ptr
< PDBPoseOutputSpecification
PDBPoseOutputSpecificationOP
 
typedef
utility::pointer::shared_ptr
< PDBPoseOutputSpecification
const > 
PDBPoseOutputSpecificationCOP
 
typedef
utility::pointer::shared_ptr
< PDBPoseOutputter
PDBPoseOutputterOP
 
typedef
utility::pointer::shared_ptr
< PDBPoseOutputter const > 
PDBPoseOutputterCOP
 
typedef
utility::pointer::shared_ptr
< PoseOutputSpecification
PoseOutputSpecificationOP
 
typedef
utility::pointer::shared_ptr
< PoseOutputSpecification
const > 
PoseOutputSpecificationCOP
 
typedef
utility::pointer::shared_ptr
< PoseOutputter
PoseOutputterOP
 
typedef
utility::pointer::shared_ptr
< PoseOutputter const > 
PoseOutputterCOP
 
typedef
utility::pointer::shared_ptr
< PoseOutputterCreator
PoseOutputterCreatorOP
 
typedef
utility::pointer::shared_ptr
< PoseOutputterCreator const > 
PoseOutputterCreatorCOP
 
typedef
utility::pointer::shared_ptr
< ScoreFileOutputSpecification
ScoreFileOutputSpecificationOP
 
typedef
utility::pointer::shared_ptr
< ScoreFileOutputSpecification
const > 
ScoreFileOutputSpecificationCOP
 
typedef
utility::pointer::shared_ptr
< ScoreFileOutputter
ScoreFileOutputterOP
 
typedef
utility::pointer::shared_ptr
< ScoreFileOutputter const > 
ScoreFileOutputterCOP
 
typedef
utility::pointer::shared_ptr
< SecondaryPoseOutputter
SecondaryPoseOutputterOP
 
typedef
utility::pointer::shared_ptr
< SecondaryPoseOutputter const > 
SecondaryPoseOutputterCOP
 
typedef
utility::pointer::shared_ptr
< SecondaryPoseOutputterCreator
SecondaryPoseOutputterCreatorOP
 
typedef
utility::pointer::shared_ptr
< SecondaryPoseOutputterCreator
const > 
SecondaryPoseOutputterCreatorCOP
 
typedef
utility::pointer::shared_ptr
< SilentFilePoseOutputSpecification
SilentFilePoseOutputSpecificationOP
 
typedef
utility::pointer::shared_ptr
< SilentFilePoseOutputSpecification
const > 
SilentFilePoseOutputSpecificationCOP
 
typedef
utility::pointer::shared_ptr
< SilentFilePoseOutputter
SilentFilePoseOutputterOP
 
typedef
utility::pointer::shared_ptr
< SilentFilePoseOutputter
const > 
SilentFilePoseOutputterCOP
 

Functions

static basic::Tracer TR ("protocols.jd3.pose_outputters.DeNovoSilentFilePoseOutputter")
 
void pose_outputter_xsd_type_definition_w_attributes (utility::tag::XMLSchemaDefinition &xsd, std::string const &outputter_type, std::string const &description, utility::tag::AttributeList const &attributes)
 Define the XML schema definition for a PoseOutputter that contains no subtags but may contain any number of attributes (aka options). More...
 
static basic::Tracer TR ("protocols.jd3.pose_outputters.PoseOutputterFactory")
 

Typedef Documentation

typedef utility::pointer::shared_ptr< mmTFPoseOutputter const > protocols::jd3::pose_outputters::mmTFPoseOutputterCOP
typedef utility::pointer::shared_ptr< PDBPoseOutputter const > protocols::jd3::pose_outputters::PDBPoseOutputterCOP
typedef utility::pointer::shared_ptr< PoseOutputter const > protocols::jd3::pose_outputters::PoseOutputterCOP
typedef utility::pointer::shared_ptr< PoseOutputter > protocols::jd3::pose_outputters::PoseOutputterOP
typedef utility::pointer::shared_ptr< ScoreFileOutputter const > protocols::jd3::pose_outputters::ScoreFileOutputterCOP

Function Documentation

void protocols::jd3::pose_outputters::pose_outputter_xsd_type_definition_w_attributes ( utility::tag::XMLSchemaDefinition &  xsd,
std::string const &  outputter_type,
std::string const &  description,
utility::tag::AttributeList const &  attributes 
)
static basic::Tracer protocols::jd3::pose_outputters::TR ( "protocols.jd3.pose_outputters.PoseOutputterFactory"  )
static
static basic::Tracer protocols::jd3::pose_outputters::TR ( "protocols.jd3.pose_outputters.DeNovoSilentFilePoseOutputter"  )
static