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core::pack::task::PackerTask Class Referenceabstract

Task class that gives instructions to the packer. More...

#include <PackerTask.hh>

Inheritance diagram for core::pack::task::PackerTask:
Inheritance graph
[legend]

Public Types

typedef chemical::AA AA
 
typedef
rotamer_set::RotamerCouplingsCOP 
RotamerCouplingsCOP
 
typedef
rotamer_set::RotamerLinksCOP 
RotamerLinksCOP
 

Public Member Functions

virtual ~PackerTask ()=0
 
virtual PackerTaskOP clone () const =0
 
PackerTaskCOP get_self_ptr () const
 self pointers More...
 
PackerTaskOP get_self_ptr ()
 
virtual void clean_residue_task (conformation::Residue const &original_residue, Size const seqpos, core::pose::Pose const &pose)=0
 
virtual Size total_residue () const =0
 
virtual void temporarily_fix_everything ()=0
 
virtual void temporarily_set_pack_residue (int resid, bool setting)=0
 
virtual bool pack_residue (int resid) const =0
 
virtual bool being_packed (Size resid) const =0
 
virtual Size num_to_be_packed () const =0
 
virtual bool design_residue (int resid) const =0
 
virtual bool being_designed (Size resid) const =0
 
virtual bool design_any () const =0
 
virtual void set_bump_check (bool setting)=0
 
virtual bool bump_check () const =0
 
virtual void and_max_rotbump_energy (Real setting)=0
 
virtual Real max_rotbump_energy () const =0
 
virtual void or_include_current (bool setting)=0
 
virtual void or_include_current (bool setting, Size resid)=0
 
virtual bool include_current (Size resid) const =0
 
virtual void add_behavior (std::string const &behavior)=0
 
virtual void add_behavior (std::string const &behavior, Size resid)=0
 
virtual bool has_behavior (std::string const &behavior, Size resid) const =0
 
virtual bool has_behavior (Size resid) const =0
 
virtual void or_adducts (bool setting)=0
 
virtual void or_adducts (bool setting, Size resid)=0
 
virtual bool adducts (Size resid) const =0
 
virtual void or_optimize_h_mode (bool setting)=0
 
virtual void or_preserve_c_beta (bool setting)=0
 
virtual void or_flip_HNQ (bool setting)=0
 
virtual void or_fix_his_tautomer (utility::vector1< int > const &positions, bool setting)=0
 
virtual void or_linmem_ig (bool setting)=0
 Activate a LinearMemoryInteraction graph that uses 95% less memory in design runs and runs twice as fast. (Not faster for fixed-sequence repackings). More...
 
virtual void and_linmem_ig (bool setting)=0
 
virtual bool linmem_ig () const =0
 
virtual void decrease_linmem_ig_history_size (Size setting)=0
 
virtual Size linmem_ig_history_size () const =0
 
virtual void or_lazy_ig (bool setting)=0
 Activate a LazyInteractionGraph that computes rotamer pair energies at most once. More...
 
virtual bool lazy_ig () const =0
 
virtual void or_double_lazy_ig (bool setting)=0
 Activates the DoubleLazyInteractionGraph, which computes rotamer pair energies at most once, and delays allocating memory to hold them until needed. Used for multistate design. More...
 
virtual bool double_lazy_ig () const =0
 
virtual void decrease_double_lazy_ig_memlimit (Size nbytes_for_rpes)=0
 
virtual Size double_lazy_ig_memlimit () const =0
 
virtual void or_multi_cool_annealer (bool setting)=0
 
virtual bool multi_cool_annealer () const =0
 
virtual void increase_multi_cool_annealer_history_size (Size setting)=0
 
virtual Size multi_cool_annealer_history_size () const =0
 
virtual void show (std::ostream &out) const =0
 
virtual void show () const =0
 
virtual void show_residue_task (std::ostream &out, Size resid) const =0
 
virtual void show_residue_task (Size resid) const =0
 
virtual void show_all_residue_tasks (std::ostream &out) const =0
 
virtual void show_all_residue_tasks () const =0
 
virtual PackerTaskinitialize_from_command_line ()=0
 
virtual PackerTaskinitialize_extra_rotamer_flags_from_command_line ()=0
 
virtual PackerTaskinitialize_from_options (utility::options::OptionCollection const &options)=0
 
virtual PackerTaskinitialize_extra_rotamer_flags_from_options (utility::options::OptionCollection const &options)=0
 
virtual PackerTaskrestrict_to_residues (utility::vector1< bool > const &residues_allowed_to_be_packed)=0
 
virtual PackerTaskrestrict_to_repacking ()=0
 
virtual ResidueLevelTask const & residue_task (Size resid) const =0
 
virtual ResidueLevelTasknonconst_residue_task (Size resid)=0
 
virtual utility::vector1< boolrepacking_residues () const =0
 
virtual utility::vector1< booldesigning_residues () const =0
 
virtual bool rotamer_couplings_exist () const =0
 
virtual RotamerCouplingsCOP rotamer_couplings () const =0
 
virtual void rotamer_couplings (RotamerCouplingsCOP setting)=0
 
virtual bool rotamer_links_exist () const =0
 
virtual RotamerLinksCOP rotamer_links () const =0
 
virtual void rotamer_links (RotamerLinksCOP setting)=0
 
virtual IGEdgeReweightContainerCOP IGEdgeReweights () const =0
 
virtual IGEdgeReweightContainerOP set_IGEdgeReweights ()=0
 
virtual void append_rotamer_operation (rotamer_set::RotamerOperationOP rotop)=0
 
virtual void append_rotamerset_operation (rotamer_set::RotamerSetOperationOP rotsetop)=0
 
virtual
rotamer_set::RotSetsOperationListIterator 
rotamer_sets_operation_begin () const =0
 
virtual
rotamer_set::RotSetsOperationListIterator 
rotamer_sets_operation_end () const =0
 
virtual void append_rotamersets_operation (rotamer_set::RotamerSetsOperationOP rotsetsop)=0
 
virtual void low_temp (Real const &low_temp)=0
 
virtual void high_temp (Real const &high_temp)=0
 
virtual void disallow_quench (bool const &disallow_quench)=0
 
virtual Real low_temp () const =0
 
virtual Real high_temp () const =0
 
virtual bool disallow_quench () const =0
 
virtual std::string task_string (pose::Pose const &pose) const =0
 
virtual void remap_residue_level_tasks (core::id::SequenceMappingCOP seqmap, core::pose::Pose const &pose)=0
 
virtual void update_commutative (PackerTask const &to_copy)=0
 
virtual void request_symmetrize_by_intersection ()=0
 
virtual void request_symmetrize_by_union ()=0
 
virtual bool symmetrize_by_union () const =0
 
virtual bool symmetrize_by_intersection () const =0
 

Static Public Member Functions

static void list_options_read (utility::options::OptionKeyList &read_options)
 

Private Member Functions

virtual PackerTaskoperator= (PackerTask const &)=0
 

Friends

std::ostream & operator<< (std::ostream &os, PackerTask const &t)
 output operator More...
 

Detailed Description

Task class that gives instructions to the packer.

Member Typedef Documentation

Constructor & Destructor Documentation

core::pack::task::PackerTask::~PackerTask ( )
pure virtualdefault

Member Function Documentation

virtual void core::pack::task::PackerTask::add_behavior ( std::string const &  behavior)
pure virtual
virtual void core::pack::task::PackerTask::add_behavior ( std::string const &  behavior,
Size  resid 
)
pure virtual
virtual bool core::pack::task::PackerTask::adducts ( Size  resid) const
pure virtual
virtual void core::pack::task::PackerTask::and_linmem_ig ( bool  setting)
pure virtual
virtual void core::pack::task::PackerTask::and_max_rotbump_energy ( Real  setting)
pure virtual
virtual void core::pack::task::PackerTask::append_rotamer_operation ( rotamer_set::RotamerOperationOP  rotop)
pure virtual
virtual void core::pack::task::PackerTask::append_rotamerset_operation ( rotamer_set::RotamerSetOperationOP  rotsetop)
pure virtual
virtual void core::pack::task::PackerTask::append_rotamersets_operation ( rotamer_set::RotamerSetsOperationOP  rotsetsop)
pure virtual
virtual bool core::pack::task::PackerTask::being_designed ( Size  resid) const
pure virtual
virtual bool core::pack::task::PackerTask::being_packed ( Size  resid) const
pure virtual
virtual bool core::pack::task::PackerTask::bump_check ( ) const
pure virtual
virtual void core::pack::task::PackerTask::clean_residue_task ( conformation::Residue const &  original_residue,
Size const  seqpos,
core::pose::Pose const &  pose 
)
pure virtual
virtual PackerTaskOP core::pack::task::PackerTask::clone ( ) const
pure virtual
virtual void core::pack::task::PackerTask::decrease_double_lazy_ig_memlimit ( Size  nbytes_for_rpes)
pure virtual
virtual void core::pack::task::PackerTask::decrease_linmem_ig_history_size ( Size  setting)
pure virtual
virtual bool core::pack::task::PackerTask::design_any ( ) const
pure virtual
virtual bool core::pack::task::PackerTask::design_residue ( int  resid) const
pure virtual
virtual utility::vector1< bool > core::pack::task::PackerTask::designing_residues ( ) const
pure virtual
virtual void core::pack::task::PackerTask::disallow_quench ( bool const &  disallow_quench)
pure virtual
virtual bool core::pack::task::PackerTask::disallow_quench ( ) const
pure virtual
virtual bool core::pack::task::PackerTask::double_lazy_ig ( ) const
pure virtual
virtual Size core::pack::task::PackerTask::double_lazy_ig_memlimit ( ) const
pure virtual
PackerTaskCOP core::pack::task::PackerTask::get_self_ptr ( ) const
inline
PackerTaskOP core::pack::task::PackerTask::get_self_ptr ( )
inline
virtual bool core::pack::task::PackerTask::has_behavior ( std::string const &  behavior,
Size  resid 
) const
pure virtual
virtual bool core::pack::task::PackerTask::has_behavior ( Size  resid) const
pure virtual
virtual void core::pack::task::PackerTask::high_temp ( Real const &  high_temp)
pure virtual
virtual Real core::pack::task::PackerTask::high_temp ( ) const
pure virtual
virtual IGEdgeReweightContainerCOP core::pack::task::PackerTask::IGEdgeReweights ( ) const
pure virtual
virtual bool core::pack::task::PackerTask::include_current ( Size  resid) const
pure virtual
virtual void core::pack::task::PackerTask::increase_multi_cool_annealer_history_size ( Size  setting)
pure virtual
virtual PackerTask& core::pack::task::PackerTask::initialize_extra_rotamer_flags_from_command_line ( )
pure virtual
virtual PackerTask& core::pack::task::PackerTask::initialize_extra_rotamer_flags_from_options ( utility::options::OptionCollection const &  options)
pure virtual
virtual PackerTask& core::pack::task::PackerTask::initialize_from_command_line ( )
pure virtual
virtual PackerTask& core::pack::task::PackerTask::initialize_from_options ( utility::options::OptionCollection const &  options)
pure virtual
virtual bool core::pack::task::PackerTask::lazy_ig ( ) const
pure virtual
virtual bool core::pack::task::PackerTask::linmem_ig ( ) const
pure virtual
virtual Size core::pack::task::PackerTask::linmem_ig_history_size ( ) const
pure virtual
void core::pack::task::PackerTask::list_options_read ( utility::options::OptionKeyList &  read_options)
static
virtual void core::pack::task::PackerTask::low_temp ( Real const &  low_temp)
pure virtual
virtual Real core::pack::task::PackerTask::low_temp ( ) const
pure virtual
virtual Real core::pack::task::PackerTask::max_rotbump_energy ( ) const
pure virtual
virtual bool core::pack::task::PackerTask::multi_cool_annealer ( ) const
pure virtual
virtual Size core::pack::task::PackerTask::multi_cool_annealer_history_size ( ) const
pure virtual
virtual ResidueLevelTask& core::pack::task::PackerTask::nonconst_residue_task ( Size  resid)
pure virtual

Implemented in core::pack::task::PackerTask_.

Referenced by protocols::task_operations::SelectByDensityFitOperation::apply(), protocols::task_operations::SelectBySASAOperation::apply(), protocols::task_operations::SelectByDeltaScoreOperation::apply(), protocols::dna::RestrictDesignToProteinDNAInterface::apply(), protocols::task_operations::RestrictNonSurfaceToRepackingOperation::apply(), protocols::hbnet::ConstrainHBondNetwork::apply(), protocols::task_operations::InteractingRotamerExplosion::apply(), core::pack::task::operation::FillAUTOTaskOperation::apply(), protocols::enzdes::SetCatalyticResPackBehavior::apply(), protocols::matdes::BuildingBlockInterfaceOperation::apply(), protocols::task_operations::CrystalContactsOperation::apply(), protocols::task_operations::ConservativeDesignOperation::apply(), protocols::task_operations::RestrictIdentitiesOperation::apply(), core::pack::task::operation::ReplicateTask::apply(), protocols::task_operations::RestrictToTerminiOperation::apply(), core::pack::task::operation::OperateOnCertainResidues::apply(), protocols::task_operations::ResidueProbDesignOperation::apply(), protocols::task_operations::RestrictNativeResiduesOperation::apply(), protocols::task_operations::MutationSetDesignOperation::apply(), core::pack::task::operation::OperateOnResidueSubset::apply(), core::pack::task::operation::NoRepackDisulfides::apply(), protocols::task_operations::JointSequenceOperation::apply(), core::pack::task::operation::ClashBasedRepackShell::apply(), core::pack::task::operation::OptH::apply(), protocols::task_operations::SeqprofConsensusOperation::apply(), protocols::simple_task_operations::DockingNoRepack1::apply(), protocols::hotspot_hashing::AddSearchPatternRotSetOp::apply(), core::pack::task::operation::RestrictResidueToRepacking::apply(), protocols::enzdes::DetectProteinLigandInterface::apply(), protocols::simple_task_operations::DockingNoRepack2::apply(), core::pack::task::operation::DesignRestrictions::apply(), protocols::task_operations::DsspDesignOperation::apply(), core::pack::task::operation::RestrictAbsentCanonicalAAS::apply(), core::pack::task::operation::DisallowIfNonnative::apply(), protocols::simple_task_operations::RestrictToInterface::apply(), protocols::task_operations::RestrictConservedLowDdgOperation::apply(), core::pack::task::operation::RotamerExplosion::apply(), protocols::enzdes::AddRigidBodyLigandConfs::apply(), protocols::flxbb::LayerDesignOperation::apply(), core::pack::task::operation::ExtraRotamersGeneric::apply(), core::pack::task::operation::AppendResidueRotamerSet::apply(), core::pack::task::operation::PreventRepacking::apply(), core::pack::task::operation::RestrictYSDesign::apply(), core::pack::task::operation::ExtraRotamers::apply(), core::pack::task::operation::ExtraChiCutoff::apply(), protocols::denovo_design::task_operations::ConsensusLoopDesignOperation::disallow_aas(), core::pack::task::NATRO::residue_action(), core::pack::task::NATAA::residue_action(), core::pack::task::ALLAAxc::residue_action(), core::pack::task::PIKAA::residue_action(), core::pack::task::PIKNA::residue_action(), core::pack::task::PIKRNA::residue_action(), core::pack::task::NOTAA::residue_action(), core::pack::task::EMPTY::residue_action(), core::pack::task::RESET::residue_action(), core::pack::task::PROPERTY::residue_action(), core::pack::task::POLAR::residue_action(), core::pack::task::APOLAR::residue_action(), core::pack::task::CHARGED::residue_action(), core::pack::task::AROMATIC::residue_action(), core::pack::task::EX::residue_action(), core::pack::task::NC::residue_action(), core::pack::task::EX_CUTOFF::residue_action(), core::pack::task::USE_INPUT_SC::residue_action(), core::pack::task::AUTO::residue_action(), core::pack::task::SCAN::residue_action(), core::pack::task::TARGET::residue_action(), core::pack::task::NO_ADDUCTS::residue_action(), core::pack::task::FIX_HIS_TAUTOMER::residue_action(), protocols::motifs::LigandMotifSearch::run(), protocols::minimization_packing::EnergyCutRotamerTrialsMinMover::setup_energycut_task(), protocols::minimization_packing::EnergyCutRotamerTrialsMover::setup_energycut_task(), and protocols::simple_task_operations::RestrictToInterface::symmetric_task().

virtual Size core::pack::task::PackerTask::num_to_be_packed ( ) const
pure virtual
virtual PackerTask& core::pack::task::PackerTask::operator= ( PackerTask const &  )
privatepure virtual
virtual void core::pack::task::PackerTask::or_adducts ( bool  setting)
pure virtual
virtual void core::pack::task::PackerTask::or_adducts ( bool  setting,
Size  resid 
)
pure virtual
virtual void core::pack::task::PackerTask::or_double_lazy_ig ( bool  setting)
pure virtual

Activates the DoubleLazyInteractionGraph, which computes rotamer pair energies at most once, and delays allocating memory to hold them until needed. Used for multistate design.

Implemented in core::pack::task::PackerTask_.

Referenced by protocols::task_operations::SetIGTypeOperation::apply().

virtual void core::pack::task::PackerTask::or_fix_his_tautomer ( utility::vector1< int > const &  positions,
bool  setting 
)
pure virtual
virtual void core::pack::task::PackerTask::or_flip_HNQ ( bool  setting)
pure virtual
virtual void core::pack::task::PackerTask::or_include_current ( bool  setting)
pure virtual
virtual void core::pack::task::PackerTask::or_include_current ( bool  setting,
Size  resid 
)
pure virtual
virtual void core::pack::task::PackerTask::or_lazy_ig ( bool  setting)
pure virtual

Activate a LazyInteractionGraph that computes rotamer pair energies at most once.

Implemented in core::pack::task::PackerTask_.

Referenced by protocols::task_operations::SetIGTypeOperation::apply().

virtual void core::pack::task::PackerTask::or_linmem_ig ( bool  setting)
pure virtual

Activate a LinearMemoryInteraction graph that uses 95% less memory in design runs and runs twice as fast. (Not faster for fixed-sequence repackings).

Implemented in core::pack::task::PackerTask_.

Referenced by protocols::task_operations::SetIGTypeOperation::apply().

virtual void core::pack::task::PackerTask::or_multi_cool_annealer ( bool  setting)
pure virtual
virtual void core::pack::task::PackerTask::or_optimize_h_mode ( bool  setting)
pure virtual
virtual void core::pack::task::PackerTask::or_preserve_c_beta ( bool  setting)
pure virtual
virtual bool core::pack::task::PackerTask::pack_residue ( int  resid) const
pure virtual

Implemented in core::pack::task::PackerTask_.

Referenced by protocols::dna::RestrictDesignToProteinDNAInterface::apply(), protocols::enzdes::DetectProteinLigandInterface::apply(), core::pack::rotamer_set::build_dna_rotamers(), core::pack::rotamer_set::build_moving_O_water_rotamers_dependent(), core::pack::rotamer_set::build_moving_O_water_rotamers_independent(), protocols::flexpack::rotamer_set::FlexbbRotamerSet::bump_check(), core::pack::rotamer_set::bump_check(), core::pack::rotamers::SingleResidueRotamerLibrary::bump_check(), core::pack::rotamer_set::RotamerSet_::bump_check(), core::pack::rotamer_set::RotamerSet_::compute_one_and_two_body_energies(), core::pack::rotamer_set::symmetry::SymmetricRotamerSet_::compute_one_body_energies(), core::pack::rotamer_set::RotamerSet_::compute_one_body_energies(), protocols::hbnet::hbnet_symm_one_body_energies(), protocols::enzdes::EnzdesFlexBBProtocol::modified_task(), protocols::backrub::positions_incompatible_with_task(), core::pack::rotamer_set::pre_bump_check(), core::pack::repackable_residues(), core::pack::repackable_residues_dup(), protocols::rotamer_recovery::RRProtocolPackRotamers::run(), protocols::rotamer_recovery::RRProtocolMinPack::run(), protocols::rotamer_recovery::RRProtocolRotamerTrials::run(), protocols::rotamer_recovery::RRProtocolMover::run(), protocols::rotamer_recovery::RRProtocolRelax::run(), protocols::rotamer_recovery::RRProtocolRTMin::run(), protocols::rotamer_recovery::RRProtocolReferenceStructure::run(), and core::pack::symmetric_repackable_residues().

virtual void core::pack::task::PackerTask::remap_residue_level_tasks ( core::id::SequenceMappingCOP  seqmap,
core::pose::Pose const &  pose 
)
pure virtual
virtual utility::vector1< bool > core::pack::task::PackerTask::repacking_residues ( ) const
pure virtual
virtual void core::pack::task::PackerTask::request_symmetrize_by_intersection ( )
pure virtual
virtual void core::pack::task::PackerTask::request_symmetrize_by_union ( )
pure virtual
virtual ResidueLevelTask const& core::pack::task::PackerTask::residue_task ( Size  resid) const
pure virtual

Implemented in core::pack::task::PackerTask_.

Referenced by core::pack::rotamer_set::UnboundRotamersOperation::alter_rotamer_set(), protocols::toolbox::rotamer_set_operations::RigidBodyMoveBaseRSO::alter_rotamer_set(), protocols::splice::SampleRotamersFromPDB_RotamerSetOperation::alter_rotamer_set_from_db(), protocols::splice::SampleRotamersFromPDB_RotamerSetOperation::alter_rotamer_set_from_pdb(), protocols::dna::RestrictDesignToProteinDNAInterface::apply(), protocols::task_operations::MutationSetDesignOperation::apply(), protocols::enzdes::DetectProteinLigandInterface::apply(), protocols::flxbb::LayerDesignOperation::apply(), core::pack::scmin::AtomTreeCollection::AtomTreeCollection(), core::pack::rotamer_set::RotamerSet_::build_dependent_rotamers(), core::pack::rotamer_set::build_dna_rotamers(), core::pack::rotamer_set::RotamerSet_::build_optimize_H_rotamers(), core::pack::rotamer_set::build_rna_rotamers(), core::pack::rotamer_set::ContinuousRotamerSet::build_rotamers(), core::pack::rotamer_set::RotamerSet_::build_rotamers(), core::pack::rotamer_set::RotamerSet_::build_rotamers_for_concrete(), core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T, N >::create_rotamers_from_chisets(), protocols::calc_taskop_movers::ConsensusDesignMover::create_sequence_profile_constraints(), protocols::denovo_design::task_operations::ConsensusLoopDesignOperation::disallow_aas(), core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T, N >::enumerate_chi_sets(), core::pack::rotamers::SingleBasicRotamerLibrary::fill_rotamer_vector(), core::pack::rotamers::SingleLigandRotamerLibrary::fill_rotamer_vector(), core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary::fill_rotamer_vector(), protocols::enzdes::EnzdesFlexBBProtocol::modified_task(), protocols::backrub::positions_incompatible_with_task(), protocols::enzdes::enzutil::recreate_task(), core::pack::task::PROPERTY::residue_action(), core::pack::task::POLAR::residue_action(), core::pack::task::APOLAR::residue_action(), core::pack::task::CHARGED::residue_action(), core::pack::task::AROMATIC::residue_action(), core::pack::task::NC::residue_action(), core::pack::rotamer_set::RotamerSet_::set_extra_samples(), and core::pack::rotamers::SingleResidueRotamerLibrary::virtual_sidechain().

virtual PackerTask& core::pack::task::PackerTask::restrict_to_repacking ( )
pure virtual
virtual PackerTask& core::pack::task::PackerTask::restrict_to_residues ( utility::vector1< bool > const &  residues_allowed_to_be_packed)
pure virtual
virtual RotamerCouplingsCOP core::pack::task::PackerTask::rotamer_couplings ( ) const
pure virtual
virtual void core::pack::task::PackerTask::rotamer_couplings ( RotamerCouplingsCOP  setting)
pure virtual
virtual bool core::pack::task::PackerTask::rotamer_couplings_exist ( ) const
pure virtual
virtual RotamerLinksCOP core::pack::task::PackerTask::rotamer_links ( ) const
pure virtual
virtual void core::pack::task::PackerTask::rotamer_links ( RotamerLinksCOP  setting)
pure virtual
virtual bool core::pack::task::PackerTask::rotamer_links_exist ( ) const
pure virtual
virtual rotamer_set::RotSetsOperationListIterator core::pack::task::PackerTask::rotamer_sets_operation_begin ( ) const
pure virtual
virtual rotamer_set::RotSetsOperationListIterator core::pack::task::PackerTask::rotamer_sets_operation_end ( ) const
pure virtual
virtual void core::pack::task::PackerTask::set_bump_check ( bool  setting)
pure virtual
virtual IGEdgeReweightContainerOP core::pack::task::PackerTask::set_IGEdgeReweights ( )
pure virtual
virtual void core::pack::task::PackerTask::show ( std::ostream &  out) const
pure virtual
virtual void core::pack::task::PackerTask::show ( ) const
pure virtual
virtual void core::pack::task::PackerTask::show_all_residue_tasks ( std::ostream &  out) const
pure virtual
virtual void core::pack::task::PackerTask::show_all_residue_tasks ( ) const
pure virtual
virtual void core::pack::task::PackerTask::show_residue_task ( std::ostream &  out,
Size  resid 
) const
pure virtual
virtual void core::pack::task::PackerTask::show_residue_task ( Size  resid) const
pure virtual
virtual bool core::pack::task::PackerTask::symmetrize_by_intersection ( ) const
pure virtual
virtual bool core::pack::task::PackerTask::symmetrize_by_union ( ) const
pure virtual
virtual std::string core::pack::task::PackerTask::task_string ( pose::Pose const &  pose) const
pure virtual
virtual void core::pack::task::PackerTask::temporarily_fix_everything ( )
pure virtual
virtual void core::pack::task::PackerTask::temporarily_set_pack_residue ( int  resid,
bool  setting 
)
pure virtual
virtual Size core::pack::task::PackerTask::total_residue ( ) const
pure virtual
virtual void core::pack::task::PackerTask::update_commutative ( PackerTask const &  to_copy)
pure virtual

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os,
PackerTask const &  t 
)
friend

output operator


The documentation for this class was generated from the following files: