Rosetta
core::scoring::hbonds::NPDHBondSet Member List

This is the complete list of members for core::scoring::hbonds::NPDHBondSet, including all inherited members.

acc_bbg_in_bb_bb_hbond(Size const residue) constcore::scoring::hbonds::HBondSet
allow_hbond(Size const index) constcore::scoring::hbonds::HBondSet
allow_hbond(HBond const &hbond) constcore::scoring::hbonds::HBondSet
append_hbond(Size const dhatm, conformation::Residue const &don_rsd, Size const aatm, conformation::Residue const &acc_rsd, HBEvalTuple const &hbe_tuple, Real const energy, Real const weight, HBondDerivs const &deriv)core::scoring::hbonds::HBondSet
atom_hbond_energies_core::scoring::hbonds::NPDHBondSetprivate
atom_hbond_sfxn_wtd_energies_core::scoring::hbonds::NPDHBondSetprivate
atom_hbond_weights_core::scoring::hbonds::NPDHBondSetprivate
atom_hbonds(AtomID const &atom, bool include_only_allowed=true) constcore::scoring::hbonds::HBondSet
atom_hbonds_all(AtomID const &atom) constcore::scoring::hbonds::HBondSet
atom_map_core::scoring::hbonds::HBondSetmutableprivate
atom_map_init_core::scoring::hbonds::HBondSetmutableprivate
AtomID typedefcore::scoring::hbonds::NPDHBondSetprivate
backbone_backbone_acceptor_core::scoring::hbonds::HBondSetprivate
backbone_backbone_donor_core::scoring::hbonds::HBondSetprivate
clear()core::scoring::hbonds::HBondSet
clone() const overridecore::scoring::hbonds::NPDHBondSet
copy_bb_donor_acceptor_arrays(HBondSet const &src)core::scoring::hbonds::HBondSet
d_hbond_weight_dE(id::AtomID const &id, Size hbond_fixed_index, Size hbond_changing_index) constcore::scoring::hbonds::NPDHBondSet
derive_per_hbond_donor_and_acceptor_weights(pose::Pose const &pose)core::scoring::hbonds::NPDHBondSetprivate
dEtot_dEhb(Size hbond_index) constcore::scoring::hbonds::NPDHBondSet
dEtot_dEhb_core::scoring::hbonds::NPDHBondSetprivate
don_bbg_in_bb_bb_hbond(Size const residue) constcore::scoring::hbonds::HBondSet
dwt_dE_for_hbond_core::scoring::hbonds::NPDHBondSetprivate
empty_hbond_vector_core::scoring::hbonds::HBondSetprivate
get_weights_for_one_partner_hbonder(id::AtomID jj_id)core::scoring::hbonds::NPDHBondSetprivate
get_weights_for_two_partner_hbonder(id::AtomID jj_id)core::scoring::hbonds::NPDHBondSetprivate
hbond(Size const number) constcore::scoring::hbonds::HBondSet
hbond_acc_npd_weight(Size index, Real setting)core::scoring::hbonds::HBondSetprotected
hbond_cop(Size const number) constcore::scoring::hbonds::HBondSet
hbond_don_npd_weight(Size index, Real setting)core::scoring::hbonds::HBondSetprotected
hbond_options() constcore::scoring::hbonds::HBondSet
hbond_weight(id::AtomID const &id, Size hbond_index) constcore::scoring::hbonds::NPDHBondSet
HBondAtomMap typedefcore::scoring::hbonds::HBondSetprivate
hbonds() constcore::scoring::hbonds::HBondSet
hbonds_core::scoring::hbonds::HBondSetprivate
HBondSet()core::scoring::hbonds::HBondSet
HBondSet(Size const nres)core::scoring::hbonds::HBondSet
HBondSet(HBondOptions const &options)core::scoring::hbonds::HBondSet
HBondSet(HBondOptions const &options, Size const nres)core::scoring::hbonds::HBondSet
HBondSet(pose::Pose &pose, bool const bb_only=true)core::scoring::hbonds::HBondSet
HBondSet(HBondOptions const &options, pose::Pose &pose, bool const bb_only=true)core::scoring::hbonds::HBondSet
HBondSet(core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::scoring::hbonds::HBondDatabase const &database)core::scoring::hbonds::HBondSet
HBondSet(HBondOptions const &options, core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::scoring::hbonds::HBondDatabase const &database)core::scoring::hbonds::HBondSet
HBondSet(HBondSet const &src)core::scoring::hbonds::HBondSet
HBondSet(HBondSet const &src, utility::vector1< core::Size > exclude_list)core::scoring::hbonds::HBondSet
HBondSet(HBondSet const &src, utility::vector1< bool > residue_mask)core::scoring::hbonds::HBondSet
HBondSet(HBondSet const &src, Size seqpos)core::scoring::hbonds::HBondSet
nbrs(Size const seqpos) constcore::scoring::hbonds::HBondSet
nbrs_core::scoring::hbonds::HBondSetprivate
nhbonds() constcore::scoring::hbonds::HBondSet
nhbonds(Size const seqpos, bool include_only_allowed=true) constcore::scoring::hbonds::HBondSet
nhbonds(AtomID const &atom, bool include_only_allowed=true) constcore::scoring::hbonds::HBondSet
NPDHBondSet()core::scoring::hbonds::NPDHBondSet
NPDHBondSet(Size const nres)core::scoring::hbonds::NPDHBondSet
NPDHBondSet(HBondOptions const &options)core::scoring::hbonds::NPDHBondSet
NPDHBondSet(HBondOptions const &options, Size const nres)core::scoring::hbonds::NPDHBondSet
NPDHBondSet(pose::Pose &pose, EnergyMap const &weights)core::scoring::hbonds::NPDHBondSet
NPDHBondSet(HBondOptions const &options, pose::Pose &pose, EnergyMap const &wights)core::scoring::hbonds::NPDHBondSet
NPDHBondSet(NPDHBondSet const &src)core::scoring::hbonds::NPDHBondSet
NPDHBondSet(NPDHBondSet const &src, utility::vector1< core::Size > const &exclude_list)core::scoring::hbonds::NPDHBondSet
NPDHBondSet(NPDHBondSet const &src, utility::vector1< bool > const &residue_mask)core::scoring::hbonds::NPDHBondSet
NPDHBondSet(NPDHBondSet const &src, Size seqpos)core::scoring::hbonds::NPDHBondSet
operator<<(std::ostream &out, const NPDHBondSet &hbond_set)core::scoring::hbonds::NPDHBondSetfriend
operator==(NPDHBondSet const &a, NPDHBondSet const &b)core::scoring::hbonds::NPDHBondSetfriend
options_core::scoring::hbonds::HBondSetprivate
parent typedefcore::scoring::hbonds::NPDHBondSetprivate
residue_hbonds(Size const seqpos, bool include_only_allowed=true) constcore::scoring::hbonds::HBondSet
resize_bb_donor_acceptor_arrays(Size const new_dimension)core::scoring::hbonds::HBondSet
set_backbone_backbone_acceptor(Size const residue, bool state)core::scoring::hbonds::HBondSetinline
set_backbone_backbone_donor(Size const residue, bool state)core::scoring::hbonds::HBondSetinline
set_hbond_options(HBondOptions const &options)core::scoring::hbonds::HBondSet
set_nbrs(Size const seqpos, Size value)core::scoring::hbonds::HBondSet
setup_atom_map() constcore::scoring::hbonds::HBondSetprivate
setup_for_residue_pair_energies(pose::Pose const &pose, bool const calculate_derivative=false)core::scoring::hbonds::NPDHBondSet
core::scoring::hbonds::HBondSet::setup_for_residue_pair_energies(pose::Pose const &pose, bool const calculate_derivative=false, bool const backbone_only=true)core::scoring::hbonds::HBondSet
sfxn_weights_core::scoring::hbonds::NPDHBondSetprivate
show(std::ostream &out) constcore::scoring::hbonds::NPDHBondSet
show() constcore::scoring::hbonds::NPDHBondSet
show(pose::Pose const &pose, bool const print_header, std::ostream &out) constcore::scoring::hbonds::NPDHBondSet
show(pose::Pose const &pose, bool const print_header=true) constcore::scoring::hbonds::NPDHBondSet
show(pose::Pose const &pose, Size const residue, bool const print_header, std::ostream &out) constcore::scoring::hbonds::NPDHBondSet
show(pose::Pose const &pose, Size const residue, bool const print_header=true) constcore::scoring::hbonds::NPDHBondSet
sort_by_weighted_energy()core::scoring::hbonds::HBondSet
sum_dEtot_dEhb_for_atom(id::AtomID const &jj_id)core::scoring::hbonds::NPDHBondSetprivate
~HBondSet() overridecore::scoring::hbonds::HBondSet
~NPDHBondSet() overridecore::scoring::hbonds::NPDHBondSet