protocols::simple_filters::ResiduesInInterfaceFilter Class Reference

#include <ResiduesInInterfaceFilter.hh>

Inheritance diagram for protocols::simple_filters::ResiduesInInterfaceFilter:

Public Member Functions
	ResiduesInInterfaceFilter ()
	ResiduesInInterfaceFilter (core::Size const residues_in_interface_threshold, core::Size const rb_jump)
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
filters::FilterOP	clone () const override
filters::FilterOP	fresh_instance () const override
	ResiduesInInterfaceFilter (ResiduesInInterfaceFilter const &init)
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
core::Size	compute (core::pose::Pose const &pose) const
	~ResiduesInInterfaceFilter () override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Size	residues_in_interface_threshold_
core::Size	rb_jump_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

ResiduesInInterfaceFilter() [1/3]

protocols::simple_filters::ResiduesInInterfaceFilter::ResiduesInInterfaceFilter ( )

inline

ResiduesInInterfaceFilter() [2/3]

protocols::simple_filters::ResiduesInInterfaceFilter::ResiduesInInterfaceFilter ( core::Size const  residues_in_interface_threshold, core::Size const  rb_jump  )

inline

References rb_jump_, and residues_in_interface_threshold_.

ResiduesInInterfaceFilter() [3/3]

protocols::simple_filters::ResiduesInInterfaceFilter::ResiduesInInterfaceFilter ( ResiduesInInterfaceFilter const &  init )

inline

References core::init::init(), rb_jump_, and residues_in_interface_threshold_.

~ResiduesInInterfaceFilter()

protocols::simple_filters::ResiduesInInterfaceFilter::~ResiduesInInterfaceFilter ( )

overridedefault

Member Function Documentation

apply()

bool protocols::simple_filters::ResiduesInInterfaceFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), residues_in_interface_threshold_, and protocols::simple_filters::residues_in_interface_tracer().

class_name()

std::string protocols::simple_filters::ResiduesInInterfaceFilter::class_name ( )

static

Referenced by protocols::simple_filters::ResiduesInInterfaceFilterCreator::keyname(), name(), and provide_xml_schema().

clone()

filters::FilterOP protocols::simple_filters::ResiduesInInterfaceFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

compute()

core::Size protocols::simple_filters::ResiduesInInterfaceFilter::compute

(

core::pose::Pose const &

pose

)

const

a utility for docking_filter

References core::scoring::get_score_function(), core::conformation::Residue::is_protein(), core::pose::Pose::num_jump(), rb_jump_, core::pose::Pose::residue(), and core::pose::Pose::size().

Referenced by apply(), report(), and report_sm().

fresh_instance()

filters::FilterOP protocols::simple_filters::ResiduesInInterfaceFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

name()

std::string protocols::simple_filters::ResiduesInInterfaceFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

parse_my_tag()

void protocols::simple_filters::ResiduesInInterfaceFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References rb_jump_, residues_in_interface_threshold_, and protocols::simple_filters::residues_in_interface_tracer().

provide_xml_schema()

void protocols::simple_filters::ResiduesInInterfaceFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::simple_filters::ResiduesInInterfaceFilterCreator::provide_xml_schema().

report()

void protocols::simple_filters::ResiduesInInterfaceFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and core::conformation::membrane::out.

report_sm()

core::Real protocols::simple_filters::ResiduesInInterfaceFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

rb_jump_

core::Size protocols::simple_filters::ResiduesInInterfaceFilter::rb_jump_

private

Referenced by compute(), parse_my_tag(), and ResiduesInInterfaceFilter().

residues_in_interface_threshold_

core::Size protocols::simple_filters::ResiduesInInterfaceFilter::residues_in_interface_threshold_

private

Referenced by apply(), parse_my_tag(), and ResiduesInInterfaceFilter().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/ResiduesInInterfaceFilter.hh
• src/protocols/simple_filters/ResiduesInInterfaceFilter.cc