protocols::jumping::MembraneJump Class Reference

#include <MembraneJump.hh>

Inheritance diagram for protocols::jumping::MembraneJump:

Public Member Functions
	~MembraneJump () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
	MembraneJump ()
void	init (std::string const &template_file, std::string const &pairings_file)
bool	defined () const
core::Size	template_size () const
core::Size	pairings_size () const
void	setup_fold_tree (core::pose::Pose &pose, core::Size njumps)
void	rt_templates (core::pose::Pose &pose)

Private Attributes
PairingLibrary	templates_
core::scoring::dssp::PairingList	pairings_
core::Size	template_size_
core::Size	pairings_size_
core::scoring::dssp::PairingList	selected_pairings_

Constructor & Destructor Documentation

~MembraneJump()

protocols::jumping::MembraneJump::~MembraneJump ( )

overridedefault

Automatically generated virtual destructor for class deriving directly from VirtualBase.

Auto-generated virtual destructor

MembraneJump()

protocols::jumping::MembraneJump::MembraneJump

(

)

Member Function Documentation

defined()

bool protocols::jumping::MembraneJump::defined ( ) const

inline

References pairings_size_, and template_size_.

init()

void protocols::jumping::MembraneJump::init	(	std::string const &	template_file,
		std::string const &	pairings_file
	)

References protocols::jumping::read_pairing_list().

pairings_size()

core::Size protocols::jumping::MembraneJump::pairings_size ( ) const

inline

References pairings_size_.

rt_templates()

void protocols::jumping::MembraneJump::rt_templates

(

core::pose::Pose &

pose

)

References core::pose::add_variant_type_to_pose_residue(), core::pose::Pose::conformation(), core::kinematics::FoldTree::cutpoint(), core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::pose::Pose::fold_tree(), core::pose::named_stub_id_to_stub_id(), and core::conformation::Conformation::set_stub_transform().

setup_fold_tree()

void protocols::jumping::MembraneJump::setup_fold_tree	(	core::pose::Pose &	pose,
		core::Size	njumps
	)

References core::pose::Pose::data(), core::pose::Pose::fold_tree(), core::pose::datacache::CacheableDataType::MEMBRANE_TOPOLOGY, core::kinematics::FoldTree::put_jump_stubs_intra_residue(), core::kinematics::FoldTree::random_tree_from_jump_points(), core::scoring::rg, core::pose::Pose::size(), core::scoring::MembraneTopology::span_begin(), core::scoring::MembraneTopology::span_end(), core::scoring::MembraneTopology::tmhelix(), and protocols::jumping::tr().

template_size()

core::Size protocols::jumping::MembraneJump::template_size ( ) const

inline

References template_size_.

Member Data Documentation

pairings_

core::scoring::dssp::PairingList protocols::jumping::MembraneJump::pairings_

private

pairings_size_

core::Size protocols::jumping::MembraneJump::pairings_size_

private

Referenced by defined(), and pairings_size().

selected_pairings_

core::scoring::dssp::PairingList protocols::jumping::MembraneJump::selected_pairings_

private

template_size_

core::Size protocols::jumping::MembraneJump::template_size_

private

Referenced by defined(), and template_size().

templates_

PairingLibrary protocols::jumping::MembraneJump::templates_

private

---

The documentation for this class was generated from the following files:

• src/protocols/jumping/MembraneJump.hh
• src/protocols/jumping/MembraneJump.cc