Rosetta  2020.46
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core::scoring::rna::data::RNA_ChemicalMappingEnergy Member List

This is the complete list of members for core::scoring::rna::data::RNA_ChemicalMappingEnergy, including all inherited members.

__pad0__core::scoring::rna::data::RNA_ChemicalMappingEnergy
atomic_interaction_cutoff() const overridecore::scoring::rna::data::RNA_ChemicalMappingEnergyvirtual
calculate_energy(pose::Pose &pose, bool const use_low_res=false, bool const rna_base_pair_computed=false) const core::scoring::rna::data::RNA_ChemicalMappingEnergy
clone() const overridecore::scoring::rna::data::RNA_ChemicalMappingEnergyvirtual
defines_high_order_terms(pose::Pose const &) const core::scoring::methods::EnergyMethodvirtual
DMS_low_resolution_potential_core::scoring::rna::data::RNA_ChemicalMappingEnergyprivate
DMS_potential_core::scoring::rna::data::RNA_ChemicalMappingEnergyprivate
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const core::scoring::methods::EnergyMethodvirtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const core::scoring::methods::EnergyMethodvirtual
finalize_after_minimizing(pose::Pose &pose) const core::scoring::methods::EnergyMethodvirtual
finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &) const overridecore::scoring::rna::data::RNA_ChemicalMappingEnergyvirtual
indicate_required_context_graphs(utility::vector1< bool > &) const overridecore::scoring::rna::data::RNA_ChemicalMappingEnergyinlinevirtual
method_type() const overridecore::scoring::methods::WholeStructureEnergyvirtual
minimize_in_whole_structure_context(pose::Pose const &) const core::scoring::methods::EnergyMethodvirtual
parent typedefcore::scoring::methods::WholeStructureEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const core::scoring::methods::EnergyMethodvirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const core::scoring::methods::EnergyMethodvirtual
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const core::scoring::methods::EnergyMethodvirtual
RNA_ChemicalMappingEnergy()core::scoring::rna::data::RNA_ChemicalMappingEnergy
score_types() const core::scoring::methods::EnergyMethodinline
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const core::scoring::methods::EnergyMethodvirtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const core::scoring::methods::EnergyMethodvirtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const core::scoring::methods::EnergyMethodvirtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const core::scoring::methods::EnergyMethodvirtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) const core::scoring::methods::EnergyMethodvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const core::scoring::methods::EnergyMethodvirtual
show_additional_info(std::ostream &, pose::Pose &, bool) const core::scoring::methods::EnergyMethodvirtual
update_residue_for_packing(pose::Pose &, Size resid) const core::scoring::methods::EnergyMethodvirtual
version() const overridecore::scoring::rna::data::RNA_ChemicalMappingEnergyinlinevirtual
WholeStructureEnergy(EnergyMethodCreatorOP)core::scoring::methods::WholeStructureEnergy
~RNA_ChemicalMappingEnergy() overridecore::scoring::rna::data::RNA_ChemicalMappingEnergy
~WholeStructureEnergy() overridecore::scoring::methods::WholeStructureEnergyinline