simply take a list of filters and combine them using the operation above More...

#include <OperatorFilter.hh>

Inheritance diagram for protocols::calc_taskop_filters::Operator:

Public Member Functions
	Operator ()

	~Operator () override

filters::FilterOP	clone () const override

filters::FilterOP	fresh_instance () const override

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

core::Real	compute (core::pose::Pose const &pose) const

utility::vector1< protocols::filters::FilterOP >	filters () const

void	add_filter (protocols::filters::FilterOP f)

void	reset_baseline (core::pose::Pose const &pose, bool const attempt_read_from_checkpoint)

core::Real	threshold () const
	goes over Sigmoid filters and resets them. Note that this is nonconst, and cannot be called from apply More...

void	threshold (core::Real const t)

Operation	operation () const

void	operation (Operation const o)

void	negate (bool const b)

bool	negate () const

utility::vector1< std::string >	relative_pose_names ()

void	relative_pose_names (utility::vector1< std::string > const &s)

bool	multi_relative () const

void	multi_relative (bool const m)

void	modify_relative_filters_pdb_names ()

bool	logarithm () const

void	logarithm (bool const b)

void	report_subvalues (bool const report)

bool	report_subvalues () const

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

static void	attributes (utility::tag::AttributeList &attlist)

Private Attributes
utility::vector1< protocols::filters::FilterOP >	filters_

Operation	operation_

core::Real	threshold_

bool	negate_

utility::vector1< std::string >	relative_pose_names_

bool	multi_relative_

bool	logarithm_

bool	report_subvalues_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

simply take a list of filters and combine them using the operation above

Constructor & Destructor Documentation

◆ Operator()

protocols::calc_taskop_filters::Operator::Operator ( )

References filters_.

◆ ~Operator()

protocols::calc_taskop_filters::Operator::~Operator ( )

overridedefault

Member Function Documentation

◆ add_filter()

void protocols::calc_taskop_filters::Operator::add_filter ( protocols::filters::FilterOP f )

References filters_.

Referenced by modify_relative_filters_pdb_names(), and parse_my_tag().

◆ apply()

bool protocols::calc_taskop_filters::Operator::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), negate(), threshold(), protocols::calc_taskop_filters::TR(), and protocols::hybridization::val.

◆ attributes()

void protocols::calc_taskop_filters::Operator::attributes ( utility::tag::AttributeList & attlist )

static

Referenced by protocols::calc_taskop_filters::MultipleSigmoids::provide_xml_schema(), and provide_xml_schema().

◆ class_name()

std::string protocols::calc_taskop_filters::Operator::class_name ( )

static

Referenced by protocols::calc_taskop_filters::OperatorFilterCreator::keyname(), name(), and provide_xml_schema().

◆ clone()

filters::FilterOP protocols::calc_taskop_filters::Operator::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

◆ compute()

core::Real protocols::calc_taskop_filters::Operator::compute ( core::pose::Pose const & pose ) const

Referenced by apply(), report(), and report_sm().

◆ filters()

utility::vector1< protocols::filters::FilterOP > protocols::calc_taskop_filters::Operator::filters ( ) const

References filters_.

Referenced by compute(), and reset_baseline().

◆ fresh_instance()

filters::FilterOP protocols::calc_taskop_filters::Operator::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

◆ logarithm() [1/2]

bool protocols::calc_taskop_filters::Operator::logarithm ( ) const

inline

References logarithm_.

Referenced by compute(), and parse_my_tag().

◆ logarithm() [2/2]

void protocols::calc_taskop_filters::Operator::logarithm ( bool const b )

inline

References protocols::match::upstream::b, and logarithm_.

◆ modify_relative_filters_pdb_names()

void protocols::calc_taskop_filters::Operator::modify_relative_filters_pdb_names ( )

References add_filter(), filters_, relative_pose_names_, and protocols::calc_taskop_filters::TR().

Referenced by parse_my_tag().

◆ multi_relative() [1/2]

bool protocols::calc_taskop_filters::Operator::multi_relative ( ) const

inline

References multi_relative_.

Referenced by parse_my_tag().

◆ multi_relative() [2/2]

void protocols::calc_taskop_filters::Operator::multi_relative ( bool const m )

inline

References multi_relative_.

◆ name()

std::string protocols::calc_taskop_filters::Operator::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

◆ negate() [1/2]

bool protocols::calc_taskop_filters::Operator::negate ( ) const

inline

References negate_.

Referenced by apply(), compute(), and parse_my_tag().

◆ negate() [2/2]

void protocols::calc_taskop_filters::Operator::negate ( bool const b )

inline

References protocols::match::upstream::b, and negate_.

◆ operation() [1/2]

Operation protocols::calc_taskop_filters::Operator::operation ( ) const

inline

References operation_.

Referenced by compute(), and parse_my_tag().

◆ operation() [2/2]

void protocols::calc_taskop_filters::Operator::operation ( Operation const o )

inline

References operation_.

◆ parse_my_tag()

void protocols::calc_taskop_filters::Operator::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

◆ provide_xml_schema()

void protocols::calc_taskop_filters::Operator::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References attributes(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::calc_taskop_filters::OperatorFilterCreator::provide_xml_schema().

◆ relative_pose_names() [1/2]

utility::vector1< std::string > protocols::calc_taskop_filters::Operator::relative_pose_names ( )

inline

References relative_pose_names_.

◆ relative_pose_names() [2/2]

void protocols::calc_taskop_filters::Operator::relative_pose_names ( utility::vector1< std::string > const & s )

inline

References relative_pose_names_.

◆ report()

void protocols::calc_taskop_filters::Operator::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and protocols::hybridization::val.

Referenced by report_subvalues().

◆ report_sm()

core::Real protocols::calc_taskop_filters::Operator::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References protocols::jd2::add_string_real_pair_to_current_job(), compute(), filters_, report_subvalues(), protocols::calc_taskop_filters::TR(), and protocols::hybridization::val.

Referenced by compute().

◆ report_subvalues() [1/2]

bool protocols::calc_taskop_filters::Operator::report_subvalues ( ) const

inline

References report_subvalues_.

Referenced by parse_my_tag(), and report_sm().

◆ report_subvalues() [2/2]

void protocols::calc_taskop_filters::Operator::report_subvalues ( bool const report )

inline

References report(), and report_subvalues_.

◆ reset_baseline()

void protocols::calc_taskop_filters::Operator::reset_baseline	(	core::pose::Pose const &	pose,
		bool const	attempt_read_from_checkpoint
	)

References filters(), and protocols::calc_taskop_filters::TR().

◆ threshold() [1/2]

core::Real protocols::calc_taskop_filters::Operator::threshold ( ) const

inline

goes over Sigmoid filters and resets them. Note that this is nonconst, and cannot be called from apply

References threshold_.

Referenced by apply(), and parse_my_tag().

◆ threshold() [2/2]

void protocols::calc_taskop_filters::Operator::threshold ( core::Real const t )

inline

References protocols::hybridization::t, and threshold_.

Member Data Documentation

◆ filters_

utility::vector1< protocols::filters::FilterOP > protocols::calc_taskop_filters::Operator::filters_

private

Referenced by add_filter(), filters(), modify_relative_filters_pdb_names(), Operator(), parse_my_tag(), and report_sm().

◆ logarithm_

bool protocols::calc_taskop_filters::Operator::logarithm_

private

Referenced by logarithm().

◆ multi_relative_

bool protocols::calc_taskop_filters::Operator::multi_relative_

private

Referenced by multi_relative().

◆ negate_

bool protocols::calc_taskop_filters::Operator::negate_

private

Referenced by negate().

◆ operation_

Operation protocols::calc_taskop_filters::Operator::operation_

private

Referenced by operation().

◆ relative_pose_names_

utility::vector1< std::string > protocols::calc_taskop_filters::Operator::relative_pose_names_

private

Referenced by modify_relative_filters_pdb_names(), parse_my_tag(), and relative_pose_names().

◆ report_subvalues_

bool protocols::calc_taskop_filters::Operator::report_subvalues_

private

Referenced by report_subvalues().

◆ threshold_

core::Real protocols::calc_taskop_filters::Operator::threshold_

private

Referenced by threshold().

The documentation for this class was generated from the following files:

src/protocols/calc_taskop_filters/OperatorFilter.hh
src/protocols/calc_taskop_filters/OperatorFilter.cc

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Operator()

◆ ~Operator()

Member Function Documentation

◆ add_filter()

◆ apply()

◆ attributes()

◆ class_name()

◆ clone()

◆ compute()

◆ filters()

◆ fresh_instance()

◆ logarithm() [1/2]

◆ logarithm() [2/2]

◆ modify_relative_filters_pdb_names()

◆ multi_relative() [1/2]

◆ multi_relative() [2/2]

◆ name()

◆ negate() [1/2]

◆ negate() [2/2]

◆ operation() [1/2]

◆ operation() [2/2]

◆ parse_my_tag()

◆ provide_xml_schema()

◆ relative_pose_names() [1/2]

◆ relative_pose_names() [2/2]

◆ report()

◆ report_sm()

◆ report_subvalues() [1/2]

◆ report_subvalues() [2/2]

◆ reset_baseline()

◆ threshold() [1/2]

◆ threshold() [2/2]

Member Data Documentation

◆ filters_

◆ logarithm_

◆ multi_relative_

◆ negate_

◆ operation_

◆ relative_pose_names_

◆ report_subvalues_

◆ threshold_