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protocols::dna::PDBOutput Member List

This is the complete list of members for protocols::dna::PDBOutput, including all inherited members.

add_evaluation(evaluation::PoseEvaluatorOP)protocols::jd2::JobOutputter
add_info(std::string const &, Strings const &, bool append=true)protocols::dna::PDBOutput
affixed_numbered_name(JobCOP job)protocols::jd2::JobOutputterprotected
call_output_observers(core::pose::Pose const &pose, JobOP job) const protocols::jd2::JobOutputter
chi_diff_threshold_protocols::dna::PDBOutputprivate
clear_evaluators()protocols::jd2::JobOutputter
designed_residue(core::Size, bool value=true)protocols::dna::PDBOutput
designed_residues_protocols::dna::PDBOutputprivate
dump_pose(JobCOP job, core::pose::Pose const &pose, utility::io::ozstream &out, std::string const &filename="") overrideprotocols::jd2::PDBJobOutputterprotectedvirtual
enabled(bool value) const protocols::dna::PDBOutputinline
enabled() const protocols::dna::PDBOutputinline
enabled_protocols::dna::PDBOutputmutableprivate
evaluate(core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &pss) const protocols::jd2::JobOutputter
evaluators() const protocols::jd2::JobOutputter
extended_name(JobCOP job, std::string const &suffix="")protocols::jd2::wwPDBJobOutputterprotectedvirtual
extract_data_from_Job(JobCOP job)protocols::jd2::wwPDBJobOutputterprotectedvirtual
file(JobCOP job, std::string const &data) overrideprotocols::jd2::FileJobOutputtervirtual
FileJobOutputter()protocols::jd2::FileJobOutputter
filename(JobCOP) const protocols::jd2::JobOutputterinlinevirtual
final_pose(JobOP, Pose const &, std::string const &) overrideprotocols::dna::PDBOutputvirtual
flush()protocols::jd2::JobOutputtervirtual
get_extension()protocols::jd2::wwPDBJobOutputterprotected
get_path()protocols::jd2::wwPDBJobOutputterprotected
get_residue_indices_to_output()protocols::dna::PDBOutputprivate
info_map_protocols::dna::PDBOutputprivate
job_has_completed(JobCOP job) overrideprotocols::jd2::wwPDBJobOutputtervirtual
JobCOP typedefprotocols::dna::PDBOutput
JobOP typedefprotocols::dna::PDBOutput
JobOutputter()protocols::jd2::JobOutputter
mainchain_torsion_diff_threshold_protocols::dna::PDBOutputprivate
note_designed_residues(PackerTaskCOP)protocols::dna::PDBOutput
operator()(Pose const &, std::string const &)protocols::dna::PDBOutput
other_pose(JobOP job, core::pose::Pose const &pose, std::string const &tag, int copy_count=-1, bool score_only=false) overrideprotocols::jd2::wwPDBJobOutputtervirtual
output_buried_unsatisfied_hbonds(ozstream &)protocols::dna::PDBOutputprivate
output_design_tags(ozstream &) const protocols::dna::PDBOutputprivate
output_hbond_info(ozstream &)protocols::dna::PDBOutputprivate
output_info(ozstream &)protocols::dna::PDBOutputprivate
output_name(JobCOP job) overrideprotocols::jd2::wwPDBJobOutputtervirtual
output_pdb(ozstream &)protocols::dna::PDBOutputprivate
output_score_info(ozstream &)protocols::dna::PDBOutputprivate
ozstream typedefprotocols::dna::PDBOutput
PackerTaskCOP typedefprotocols::dna::PDBOutput
parent typedefprotocols::jd2::PDBJobOutputter
PDBJobOutputter()protocols::jd2::PDBJobOutputter
PDBOutput()protocols::dna::PDBOutput
Pose typedefprotocols::dna::PDBOutput
pose_copy_protocols::dna::PDBOutputprivate
PoseCOP typedefprotocols::dna::PDBOutput
PoseOP typedefprotocols::dna::PDBOutput
reference_pose(Pose const &)protocols::dna::PDBOutputvirtual
reference_pose() const protocols::dna::PDBOutput
reference_pose_protocols::dna::PDBOutputprivate
remove_info(std::string const &)protocols::dna::PDBOutput
res_indices_to_output_protocols::dna::PDBOutputprivate
Residue typedefprotocols::dna::PDBOutput
residues_are_different(Residue const &, Residue const &) const protocols::dna::PDBOutput
score_function(ScoreFunction const &sf)protocols::dna::PDBOutput
score_function() const protocols::dna::PDBOutput
score_function_protocols::dna::PDBOutputprivate
scorefile(JobCOP job, core::pose::Pose const &pose, std::string prefix_tag="", std::string suffix_tag="", std::string scorefile="")protocols::jd2::FileJobOutputterprotectedvirtual
scorefile_name()protocols::jd2::FileJobOutputterinline
ScoreFunction typedefprotocols::dna::PDBOutput
ScoreFunctionCOP typedefprotocols::dna::PDBOutput
ScoreFunctionOP typedefprotocols::dna::PDBOutput
set_defaults()protocols::jd2::FileJobOutputter
set_evaluators(evaluation::PoseEvaluators const &)protocols::jd2::JobOutputter
set_extension(std::string const &extension)protocols::jd2::wwPDBJobOutputterprotected
set_path(std::string const &path)protocols::jd2::wwPDBJobOutputterprotected
starting_pose(Pose const &) overrideprotocols::dna::PDBOutputvirtual
Strings typedefprotocols::dna::PDBOutput
StringsMap typedefprotocols::dna::PDBOutput
write_scorefile() const protocols::jd2::FileJobOutputterinline
wwPDBJobOutputter()protocols::jd2::wwPDBJobOutputter
~FileJobOutputter() overrideprotocols::jd2::FileJobOutputter
~JobOutputter() overrideprotocols::jd2::JobOutputter
~PDBJobOutputter() overrideprotocols::jd2::PDBJobOutputter
~PDBOutput() overrideprotocols::dna::PDBOutput
~wwPDBJobOutputter() overrideprotocols::jd2::wwPDBJobOutputter