protocols::abinitio::AlternativePairings Class Reference

#include <StrandConstraints.hh>

Public Member Functions
	AlternativePairings ()
bool	compatible (core::scoring::dssp::StrandPairing const &pairing) const
bool	antiparallel () const
bool	add_pairing (PairingStatEntry const &)
void	show (std::ostream &) const
void	build_constraints (core::pose::Pose const &pose, core::scoring::constraints::ConstraintCOPs &cst) const

Private Types
typedef utility::vector1< PairingStatEntry >	Pairings

Private Attributes
Pairings	pairings_
bool	anti_

Member Typedef Documentation

Pairings

typedef utility::vector1< PairingStatEntry > protocols::abinitio::AlternativePairings::Pairings

private

Constructor & Destructor Documentation

AlternativePairings()

protocols::abinitio::AlternativePairings::AlternativePairings ( )

inline

Member Function Documentation

add_pairing()

bool protocols::abinitio::AlternativePairings::add_pairing

(

PairingStatEntry const &

pairing_entry

)

References core::scoring::dssp::StrandPairing::antiparallel(), protocols::abinitio::PairingStatEntry::models(), and protocols::abinitio::PairingStatEntry::pairing().

Referenced by protocols::abinitio::StrandConstraints::add_pairing().

antiparallel()

bool protocols::abinitio::AlternativePairings::antiparallel ( ) const

inline

References anti_.

build_constraints()

void protocols::abinitio::AlternativePairings::build_constraints	(	core::pose::Pose const &	pose,
		core::scoring::constraints::ConstraintCOPs &	cst
	)		const

References core::scoring::constraints::BoundFunc::clone(), core::sequence::end, core::pose::named_atom_id_to_atom_id(), core::scoring::pair, protocols::loops::start, and tr().

compatible()

bool protocols::abinitio::AlternativePairings::compatible

(

core::scoring::dssp::StrandPairing const &

pairing

)

const

References core::scoring::dssp::StrandPairing::antiparallel(), core::scoring::dssp::StrandPairing::begin1(), core::scoring::dssp::StrandPairing::end1(), core::scoring::dssp::StrandPairing::get_register(), protocols::abinitio::register_cutoff(), and protocols::abinitio::residue_cutoff().

show()

void protocols::abinitio::AlternativePairings::show

(

std::ostream &

out

)

const

References core::conformation::membrane::out.

Referenced by protocols::abinitio::operator<<().

Member Data Documentation

anti_

bool protocols::abinitio::AlternativePairings::anti_

private

Referenced by antiparallel().

pairings_

Pairings protocols::abinitio::AlternativePairings::pairings_

private

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The documentation for this class was generated from the following files:

• src/protocols/abinitio/StrandConstraints.hh
• src/protocols/abinitio/StrandConstraints.cc