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SymDockProtocol.cc File Reference

Symmetric Protein-Protein Docking Protocol. More...

#include <protocols/symmetric_docking/SymDockProtocol.hh>
#include <protocols/symmetric_docking/SymSidechainMinMover.hh>
#include <protocols/symmetric_docking/SymDockProtocolCreator.hh>
#include <core/io/raw_data/ScoreMap.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/PDBInfo.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/DataCache.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/kinematics/FoldTree.hh>
#include <basic/datacache/DiagnosticData.hh>
#include <core/types.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <protocols/symmetry/SymDockingInitialPerturbation.hh>
#include <protocols/symmetric_docking/SymDockingLowRes.hh>
#include <protocols/symmetric_docking/SymDockingHiRes.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/constraint_movers/ConstraintSetMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/relax/util.hh>
#include <protocols/simple_filters/SAXSScoreFilter.hh>
#include <basic/options/keys/filters.OptionKeys.gen.hh>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/TaskFactory.fwd.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <core/pack/task/operation/OperateOnCertainResidues.hh>
#include <core/pack/task/operation/ResLvlTaskOperations.hh>
#include <core/pack/task/operation/ResFilters.hh>
#include <protocols/simple_task_operations/RestrictToInterface.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/simple_moves/ScoreMover.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/scoring/Interface.hh>
#include <protocols/viewer/viewers.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <utility/file/FileName.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <core/pose/symmetry/util.hh>
#include <basic/Tracer.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <core/scoring/electron_density/util.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/symmetry/SetupForSymmetryMover.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <basic/options/keys/docking.OptionKeys.gen.hh>
#include <basic/prof.hh>
#include <utility/tag/Tag.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::symmetric_docking
 

Functions

static basic::Tracer protocols::symmetric_docking::TR ("protocols.symmetric_docking.SymDockProtocol")
 
void protocols::symmetric_docking::SymDock_main ()
 Define Main funciton for symmetric docking protocol. More...
 

Detailed Description

Symmetric Protein-Protein Docking Protocol.

Dock symmetrical assemblies together - works with the symmetry framework in Rosetta 3. Also includes some options for working with membranes Last Modified: 10/25/14

Author
Ingemar Andre
Rebecca Alford (adding membranes & comments)