#include <NMerSVMEnergyFilter.hh>
◆ NMerSVMEnergyFilter() [1/2]
protocols::simple_filters::NMerSVMEnergyFilter::NMerSVMEnergyFilter |
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◆ NMerSVMEnergyFilter() [2/2]
protocols::simple_filters::NMerSVMEnergyFilter::NMerSVMEnergyFilter |
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core::Real const |
score_type_threshold, |
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std::string |
string_resnums |
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◆ ~NMerSVMEnergyFilter()
protocols::simple_filters::NMerSVMEnergyFilter::~NMerSVMEnergyFilter |
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overridedefault |
◆ apply()
bool protocols::simple_filters::NMerSVMEnergyFilter::apply |
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core::pose::Pose const & |
pose | ) |
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overridevirtual |
◆ class_name()
std::string protocols::simple_filters::NMerSVMEnergyFilter::class_name |
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◆ clone()
◆ compute()
References count_eps_, dump_table_, protocols::simple_filters::nmer_svm_res_data::energy, energy_method_, ep_cutoff_, core::scoring::methods::NMerSVMEnergy::get_residue_energy_by_svm(), core::pose::get_resnum_list_ordered(), core::scoring::methods::NMerSVMEnergy::n_svms(), core::scoring::methods::NMerSVMEnergy::nmer_length(), protocols::simple_filters::nmer_svm_res_data::nmer_seq, core::pose::Pose::pdb_info(), protocols::simple_filters::nmer_svm_res_data::pdb_seqpos, protocols::simple_filters::print_nmer_svm_energy_data(), rank_as_score_, protocols::filters::Filter::score(), protocols::simple_filters::nmer_svm_res_data::seqpos, core::pose::Pose::sequence(), core::pose::Pose::size(), string_resnums_, protocols::simple_filters::nmer_svm_res_data::svm_energies, protocols::simple_filters::nmer_svm_res_data::svm_rank_avg, protocols::simple_filters::nmer_svm_res_data::svm_ranks, and core::id::to_string().
Referenced by apply(), report(), and report_sm().
◆ fresh_instance()
filters::FilterOP protocols::simple_filters::NMerSVMEnergyFilter::fresh_instance |
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◆ name()
std::string protocols::simple_filters::NMerSVMEnergyFilter::name |
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const |
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overridevirtual |
◆ parse_my_tag()
Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.
Reimplemented from protocols::filters::Filter.
References count_eps_, dump_table_, energy_method_, ep_cutoff_, core::scoring::methods::NMerSVMEnergy::gate_svm_scores(), core::scoring::methods::NMerSVMEnergy::nmer_length(), core::scoring::methods::NMerSVMEnergy::nmer_svm_scorecut(), rank_as_score_, core::scoring::methods::NMerSVMEnergy::read_nmer_svm(), core::scoring::methods::NMerSVMEnergy::read_nmer_svm_list(), score_type_threshold_, and string_resnums_.
◆ provide_xml_schema()
void protocols::simple_filters::NMerSVMEnergyFilter::provide_xml_schema |
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utility::tag::XMLSchemaDefinition & |
xsd | ) |
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◆ report()
void protocols::simple_filters::NMerSVMEnergyFilter::report |
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std::ostream & |
out, |
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core::pose::Pose const & |
pose |
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overridevirtual |
◆ report_sm()
◆ count_eps_
bool protocols::simple_filters::NMerSVMEnergyFilter::count_eps_ |
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◆ dump_table_
bool protocols::simple_filters::NMerSVMEnergyFilter::dump_table_ |
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◆ energy_method_
◆ ep_cutoff_
core::Real protocols::simple_filters::NMerSVMEnergyFilter::ep_cutoff_ |
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◆ opts_
◆ rank_as_score_
bool protocols::simple_filters::NMerSVMEnergyFilter::rank_as_score_ |
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◆ score_type_threshold_
core::Real protocols::simple_filters::NMerSVMEnergyFilter::score_type_threshold_ |
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◆ string_resnums_
std::string protocols::simple_filters::NMerSVMEnergyFilter::string_resnums_ |
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The documentation for this class was generated from the following files: