Rosetta  2020.37
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Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::NMerSVMEnergyFilter Class Reference

#include <NMerSVMEnergyFilter.hh>

Inheritance diagram for protocols::simple_filters::NMerSVMEnergyFilter:
Inheritance graph
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Public Member Functions

 NMerSVMEnergyFilter ()
 
 NMerSVMEnergyFilter (core::Real const score_type_threshold, std::string string_resnums)
 
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
filters::FilterOP clone () const override
 
filters::FilterOP fresh_instance () const override
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
core::Real compute (core::pose::Pose const &pose) const
 
 ~NMerSVMEnergyFilter () override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

core::Real score_type_threshold_
 
bool dump_table_
 
std::string string_resnums_
 
core::scoring::methods::EnergyMethodOptions opts_
 
core::scoring::methods::NMerSVMEnergy energy_method_ = core::scoring::methods::NMerSVMEnergy( opts_ )
 
bool count_eps_
 
bool rank_as_score_
 
core::Real ep_cutoff_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::simple_filters::NMerSVMEnergyFilter::NMerSVMEnergyFilter ( )
protocols::simple_filters::NMerSVMEnergyFilter::NMerSVMEnergyFilter ( core::Real const  score_type_threshold,
std::string  string_resnums 
)
protocols::simple_filters::NMerSVMEnergyFilter::~NMerSVMEnergyFilter ( )
overridedefault

Member Function Documentation

bool protocols::simple_filters::NMerSVMEnergyFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), protocols::filters::Filter::score(), score_type_threshold_, and protocols::simple_filters::TR().

std::string protocols::simple_filters::NMerSVMEnergyFilter::class_name ( )
static
filters::FilterOP protocols::simple_filters::NMerSVMEnergyFilter::clone ( ) const
inlineoverridevirtual
core::Real protocols::simple_filters::NMerSVMEnergyFilter::compute ( core::pose::Pose const &  pose) const
filters::FilterOP protocols::simple_filters::NMerSVMEnergyFilter::fresh_instance ( ) const
inlineoverridevirtual
std::string protocols::simple_filters::NMerSVMEnergyFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::simple_filters::NMerSVMEnergyFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual
void protocols::simple_filters::NMerSVMEnergyFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::simple_filters::NMerSVMEnergyFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::NMerSVMEnergyFilter::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

bool protocols::simple_filters::NMerSVMEnergyFilter::count_eps_
private

Referenced by compute(), and parse_my_tag().

bool protocols::simple_filters::NMerSVMEnergyFilter::dump_table_
private

Referenced by compute(), and parse_my_tag().

core::scoring::methods::NMerSVMEnergy protocols::simple_filters::NMerSVMEnergyFilter::energy_method_ = core::scoring::methods::NMerSVMEnergy( opts_ )
private

Referenced by compute(), and parse_my_tag().

core::Real protocols::simple_filters::NMerSVMEnergyFilter::ep_cutoff_
private

Referenced by compute(), and parse_my_tag().

core::scoring::methods::EnergyMethodOptions protocols::simple_filters::NMerSVMEnergyFilter::opts_
private
bool protocols::simple_filters::NMerSVMEnergyFilter::rank_as_score_
private

Referenced by compute(), and parse_my_tag().

core::Real protocols::simple_filters::NMerSVMEnergyFilter::score_type_threshold_
private
std::string protocols::simple_filters::NMerSVMEnergyFilter::string_resnums_
private

The documentation for this class was generated from the following files: