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core::energy_methods::NetChargeEnergy Member List

This is the complete list of members for core::energy_methods::NetChargeEnergy, including all inherited members.

atomic_interaction_cutoff() constcore::scoring::methods::WholeStructureEnergyinlinevirtual
atomistic_energy(core::Size atmno, conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
atomistic_pair_energy(core::Size atmno1, conformation::Residue const &rsd1, core::Size atomno2, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
calculate_energy(utility::vector1< core::conformation::ResidueCOP > const &resvect, utility::vector1< core::Size > const &rotamer_ids, core::Size const substitution_position=0) const overridecore::energy_methods::NetChargeEnergyvirtual
calculate_energy(utility::vector1< core::conformation::ResidueCOP > const &resvect, utility::vector1< core::scoring::netcharge_energy::NetChargeEnergySetupCOP > const &setup_helpers, utility::vector1< core::select::residue_selector::ResidueSubset > const &masks) constcore::energy_methods::NetChargeEnergyvirtual
clean_up_residuearrayannealableenergy_after_packing(core::pose::Pose &pose)core::scoring::annealing::ResidueArrayAnnealableEnergyvirtual
clone() const overridecore::energy_methods::NetChargeEnergyvirtual
commit_considered_substitution()core::scoring::annealing::ResidueArrayAnnealableEnergyvirtual
defines_high_order_terms(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) constcore::scoring::methods::EnergyMethodvirtual
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) constcore::scoring::methods::EnergyMethodvirtual
finalize_after_minimizing(pose::Pose &pose) constcore::scoring::methods::EnergyMethodvirtual
finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const overridecore::energy_methods::NetChargeEnergyvirtual
get_helpers_from_pose(core::pose::Pose const &pose, utility::vector1< core::scoring::netcharge_energy::NetChargeEnergySetupCOP > &setup_helpers, utility::vector1< core::select::residue_selector::ResidueSubset > &masks) constcore::energy_methods::NetChargeEnergyprivate
has_atomistic_energies() constcore::scoring::methods::EnergyMethodvirtual
has_atomistic_pairwise_energies() constcore::scoring::methods::EnergyMethodvirtual
indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const overridecore::energy_methods::NetChargeEnergyvirtual
method_type() const overridecore::scoring::methods::WholeStructureEnergyvirtual
minimize_in_whole_structure_context(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
NetChargeEnergy(core::scoring::methods::EnergyMethodOptions const &options)core::energy_methods::NetChargeEnergy
NetChargeEnergy(NetChargeEnergy const &src)core::energy_methods::NetChargeEnergy
parent typedefcore::scoring::methods::WholeStructureEnergy
parent1 typedefcore::energy_methods::NetChargeEnergy
parent2 typedefcore::energy_methods::NetChargeEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) constcore::scoring::methods::EnergyMethodvirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const overridecore::energy_methods::NetChargeEnergyvirtual
report() constcore::energy_methods::NetChargeEnergy
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) constcore::scoring::methods::EnergyMethodvirtual
ResidueArrayAnnealableEnergy()core::scoring::annealing::ResidueArrayAnnealableEnergy
ResidueArrayAnnealableEnergy(ResidueArrayAnnealableEnergy const &src)core::scoring::annealing::ResidueArrayAnnealableEnergy
score_types() constcore::scoring::methods::EnergyMethodinline
score_types_core::scoring::methods::EnergyMethodprivate
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
set_up_residuearrayannealableenergy_for_packing(core::pose::Pose &pose, core::pack::rotamer_set::RotamerSets const &rotamersets, core::scoring::ScoreFunction const &sfxn) overridecore::energy_methods::NetChargeEnergyvirtual
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) constcore::scoring::methods::EnergyMethodvirtual
setup_helper_cop(core::Size const index) constcore::energy_methods::NetChargeEnergyinlineprivate
setup_helper_count() constcore::energy_methods::NetChargeEnergyinlineprivate
setup_helper_masks_for_packing_core::energy_methods::NetChargeEnergyprivate
setup_helpers_core::energy_methods::NetChargeEnergyprivate
setup_helpers_for_packing_core::energy_methods::NetChargeEnergyprivate
show_additional_info(std::ostream &, pose::Pose &, bool) constcore::scoring::methods::EnergyMethodvirtual
update_residue_for_packing(pose::Pose &, Size resid) constcore::scoring::methods::EnergyMethodvirtual
version() const overridecore::energy_methods::NetChargeEnergyvirtual
WholeStructureEnergy(EnergyMethodCreatorOP)core::scoring::methods::WholeStructureEnergy
~NetChargeEnergy() overridecore::energy_methods::NetChargeEnergy
~ResidueArrayAnnealableEnergy()core::scoring::annealing::ResidueArrayAnnealableEnergyvirtual
~WholeStructureEnergy() overridecore::scoring::methods::WholeStructureEnergyinline