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MHCEpitopePredictor.hh File Reference

Base class for an MHC epitope predictor, which takes a peptide (string) and returns a score predicting its risk of MHC binding (lower is lower risk, with 0 being none) More...

#include <core/scoring/mhc_epitope_energy/MHCEpitopePredictor.fwd.hh>
#include <core/chemical/AA.hh>
#include <utility/vector1.hh>
#include <core/types.hh>
#include <utility/VirtualBase.hh>

Classes

class  core::scoring::mhc_epitope_energy::MHCEpitopePredictor
 

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::scoring
 
 core::scoring::mhc_epitope_energy
 

Detailed Description

Base class for an MHC epitope predictor, which takes a peptide (string) and returns a score predicting its risk of MHC binding (lower is lower risk, with 0 being none)

The peptides are of fixed length, specified for the predictor (e.g., for class II MHC: 9 for Propred, 15 for NetMHCII and IEDB)

Author
Chris Bailey-Kellogg, cbk@c.nosp@m.s.da.nosp@m.rtmou.nosp@m.th.e.nosp@m.du; Brahm Yachnin, brahm.nosp@m..yac.nosp@m.hnin@.nosp@m.rutg.nosp@m.ers.e.nosp@m.du